Evidence map›Paper›PMID 27096353›Full record

ArticleEquine veterinary journal2017

Comparative transcriptome analysis of equine alveolar macrophages.

A E Karagianni, R Kapetanovic, K M Summers, B C McGorum, D A Hume, R S Pirie

Open access · hybridAbstract read
In one paragraph

Article in Equine veterinary journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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  14. Alveolar macrophage phenotypes in severe equine asthma.Veterinary journal (London, England : 1997) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

A E KaragianniRoslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK.
R KapetanovicRoslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK.
K M SummersRoslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK.
B C McGorumRoslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK.
D A HumeRoslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK.
R S PirieRoslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK.
Roslin Institute · GBUniversity of Edinburgh · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/D/20211552
6 · The paper itself

Abstract

reasons for performing studyAlveolar macrophages (AMs) are the first line of defence against pathogens in the lungs of all mammalian species and thus may constitute appropriate therapeutic target cells in the treatment and prevention of opportunistic airway infections. Therefore, acquiring a better understanding of equine macrophage biology is of paramount importance in addressing this issue in relation to the horse.

objectivesTo compare the transcriptome of equine AMs with that of equine peritoneal macrophages (PMs) and to investigate the effect of lipopolysaccharide (LPS) on equine AM. STUDY

designGene expression study of equine AMs.

methodsCells from both bronchoalveolar and peritoneal lavage fluid were isolated from systemically healthy horses that had been submitted to euthanasia. Cells were cryopreserved. RNA was extracted and comparative microarray analyses were performed in AMs and PMs, and in AMs treated and untreated with LPS. Comparisons with published data derived from human AM studies were made, with particular focus on LPS-induced inflammatory status.

resultsThe comparison between AMs and PMs revealed the differential basal expression of 451 genes. Gene expression analysis revealed an alternative (M2) macrophage polarisation profile in AMs and a hybrid macrophage activation profile in PMs, a phenomenon potentially attributable to a degree of induced endotoxin tolerance. The gene expression profile of equine AMs following LPS stimulation revealed significant changes in the expression of 240 genes, including well-known upregulated inflammatory genes. This LPS-induced gene expression profile of equine AMs more closely resembles that of human rather than murine macrophages.

conclusionsThis study improves current understanding of equine macrophage biology. These data suggest that the horse may represent a suitable animal model for the study of human macrophage-associated lung inflammation and data derived from human macrophage studies may have significant relevance to the horse.

Indexed as

HorsesAnimalsCells, CulturedGene Expression RegulationLipopolysaccharidesMacrophages, AlveolarMacrophages, PeritonealTranscriptomeLipopolysaccharideshorselipopolysaccharidelungsmicroarrayperitoneal cavity

Identifiers

PMID27096353
PMCPMC5412682
OpenAlexW2340118470

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.