Evidence map›Paper›PMID 27095595›Full record

ArticleScience signaling2016

Computational spatiotemporal analysis identifies WAVE2 and cofilin as joint regulators of costimulation-mediated T cell actin dynamics.

Kole T Roybal, Taráz E Buck, Xiongtao Ruan, Baek Hwan Cho, Danielle J Clark, Rachel Ambler, Helen M Tunbridge, Jianwei Zhang, Paul Verkade, Christoph Wülfing and 1 more

Open access · greenAbstract read
In one paragraph

Article in Science signaling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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  17. Systems Imaging of the Immune Synapse.Methods in molecular biology (Clifton, N.J.) · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Kole T RoybalSchool of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK. Department of Immunology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Taráz E BuckComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Xiongtao RuanComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Baek Hwan ChoComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Danielle J ClarkSchool of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK.
Rachel AmblerSchool of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK.
Helen M TunbridgeSchool of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK.
Jianwei ZhangComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Paul VerkadeSchool of Biochemistry, University of Bristol, Bristol BS8 1TD, UK.
Christoph WülfingSchool of Cellular and Molecular Medicine, University of Bristol, Bristol BS8 1TD, UK. Department of Immunology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. christoph.wuelfing@bristol.ac.uk murphy@cmu.edu.
Robert F MurphyComputational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA. Departments of Biological Sciences, Biomedical Engineering, and Machine Learning, Carnegie Mellon University, Pittsburgh, PA 15213, USA. Freiburg Institute for Advanced Studies and Faculty of Biology, Albert Ludwig University of Freiburg, Freiburg im Breisgau 79104, Baden-Württemberg, Germany. christoph.wuelfing@bristol.ac.uk murphy@cmu.edu.
University of Bristol · GBCarnegie Mellon University · US

Funding

TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
NIGMS NIH HHS P41 GM103712
6 · The paper itself

Abstract

Fluorescence microscopy is one of the most important tools in cell biology research because it provides spatial and temporal information to investigate regulatory systems inside cells. This technique can generate data in the form of signal intensities at thousands of positions resolved inside individual live cells. However, given extensive cell-to-cell variation, these data cannot be readily assembled into three- or four-dimensional maps of protein concentration that can be compared across different cells and conditions. We have developed a method to enable comparison of imaging data from many cells and applied it to investigate actin dynamics in T cell activation. Antigen recognition in T cells by the T cell receptor (TCR) is amplified by engagement of the costimulatory receptor CD28. We imaged actin and eight core actin regulators to generate over a thousand movies of T cells under conditions in which CD28 was either engaged or blocked in the context of a strong TCR signal. Our computational analysis showed that the primary effect of costimulation blockade was to decrease recruitment of the activator of actin nucleation WAVE2 (Wiskott-Aldrich syndrome protein family verprolin-homologous protein 2) and the actin-severing protein cofilin to F-actin. Reconstitution of WAVE2 and cofilin activity restored the defect in actin signaling dynamics caused by costimulation blockade. Thus, we have developed and validated an approach to quantify protein distributions in time and space for the analysis of complex regulatory systems.

Indexed as

Actin CytoskeletonActin Depolymerizing FactorsAnimalsBlotting, WesternCD28 AntigensCells, CulturedComputational BiologyGreen Fluorescent ProteinsImmunological SynapsesKineticsLymphocyte ActivationMice, TransgenicMicroscopy, FluorescenceReceptors, Antigen, T-CellSignal TransductionTime-Lapse ImagingActin Depolymerizing FactorsCD28 AntigensGreen Fluorescent ProteinsReceptors, Antigen, T-CellWiskott-Aldrich Syndrome Protein Family

Identifiers

PMID27095595
PMCPMC4871116
OpenAlexW2342193534

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.