Evidence map›Paper›PMID 27095199›Full record

ArticleNucleic acids research2016

Poly(A)-binding proteins are required for microRNA-mediated silencing and to promote target deadenylation in C. elegans.

Mathieu N Flamand, Edlyn Wu, Ajay Vashisht, Guillaume Jannot, Brett D Keiper, Martin J Simard, James Wohlschlegel, Thomas F Duchaine

Abstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Processing body (P-body) and its mediators in cancer.Molecular and cellular biochemistry · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The microRNAsThe Journal of biological chemistry · 2019
    Article
  19. Mechanistic Insights into MicroRNA-Mediated Gene Silencing.Cold Spring Harbor perspectives in biology · 2019
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mathieu N FlamandDepartment of Biochemistry, McGill University, Montreal, QC H3A 1A3, Canada Goodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Edlyn WuDepartment of Biochemistry, McGill University, Montreal, QC H3A 1A3, Canada Division of Experimental Medicine & Goodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada.
Ajay VashishtDepartment of Biological Chemistry David Geffen School of Medicine at UCLA, Los Angeles, CA 90095, USA.
Guillaume JannotSt-Patrick Research Group in Basic Oncology, Centre Hospitalier Universitaire de Québec-Université Laval (Hôtel-Dieu de Québec), Laval University Cancer Research Centre, Quebec City, QC G1R 2J6, Canada.
Brett D KeiperDepartment of Biochemistry and Molecular Biology, Brody School of Medicine at East Carolina University, Greenville, NC 27834, USA.
Martin J SimardSt-Patrick Research Group in Basic Oncology, Centre Hospitalier Universitaire de Québec-Université Laval (Hôtel-Dieu de Québec), Laval University Cancer Research Centre, Quebec City, QC G1R 2J6, Canada.
James WohlschlegelDepartment of Biological Chemistry David Geffen School of Medicine at UCLA, Los Angeles, CA 90095, USA.
Thomas F DuchaineDepartment of Biochemistry, McGill University, Montreal, QC H3A 1A3, Canada Division of Experimental Medicine & Goodman Cancer Research Center, McGill University, Montreal, QC H3A 1A3, Canada thomas.duchaine@mcgill.ca.

Funding

CIHR MOP 123352CIHR MOP-142241
6 · The paper itself

Abstract

Cytoplasmic poly(A)-binding proteins (PABPs) link mRNA 3' termini to translation initiation factors, but they also play key roles in mRNA regulation and decay. Reports from mice, zebrafish and Drosophila further involved PABPs in microRNA (miRNA)-mediated silencing, but through seemingly distinct mechanisms. Here, we implicate the two Caenorhabditis elegans PABPs (PAB-1 and PAB-2) in miRNA-mediated silencing, and elucidate their mechanisms of action using concerted genetics, protein interaction analyses, and cell-free assays. We find that C. elegans PABPs are required for miRNA-mediated silencing in embryonic and larval developmental stages, where they act through a multi-faceted mechanism. Depletion of PAB-1 and PAB-2 results in loss of both poly(A)-dependent and -independent translational silencing. PABPs accelerate miRNA-mediated deadenylation, but this contribution can be modulated by 3'UTR sequences. While greater distances with the poly(A) tail exacerbate dependency on PABP for deadenylation, more potent miRNA-binding sites partially suppress this effect. Our results refine the roles of PABPs in miRNA-mediated silencing and support a model wherein they enable miRNA-binding sites by looping the 3'UTR poly(A) tail to the bound miRISC and deadenylase.

Indexed as

3' Untranslated RegionsAdenosine MonophosphateAnimalsBinding SitesCaenorhabditis elegansCaenorhabditis elegans ProteinsEmbryo, NonmammalianGene SilencingLarvaMicroRNAsPoly APoly(A)-Binding Protein IPoly(A)-Binding Protein IIProtein BindingProtein BiosynthesisRNA-Induced Silencing Complex3' Untranslated RegionsAdenosine MonophosphateCaenorhabditis elegans ProteinsMicroRNAsPoly APoly(A)-Binding Protein IPoly(A)-Binding Protein IIRNA-Induced Silencing Complex

Identifiers

PMID27095199
PMCPMC4937315

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.