Evidence map›Paper›PMID 27094954›Full record

ArticleJournal of medicinal chemistry2016

Design, Synthesis, and Biological Evaluations of Hydroxypyridonecarboxylic Acids as Inhibitors of HIV Reverse Transcriptase Associated RNase H.

Jayakanth Kankanala, Karen A Kirby, Feng Liu, Lena Miller, Eva Nagy, Daniel J Wilson, Michael A Parniak, Stefan G Sarafianos, Zhengqiang Wang

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 63 citations in OpenAlex.

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  5. Structure-Based Design of Novel Thiazolone[3,2-Molecules (Basel, Switzerland) · 2024
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  10. Discovery ofActa pharmaceutica Sinica. B · 2022
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  11. Article
  12. Article
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
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  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jayakanth KankanalaCenter for Drug Design, Academic Health Center, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Karen A KirbyDepartment of Molecular Microbiology and Immunology and Department of Biochemistry, University of Missouri School of Medicine, Christopher S. Bond Life Sciences Center , Columbia, Missouri 65211, United States.
Feng LiuCenter for Drug Design, Academic Health Center, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Lena MillerDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine , Pittsburgh, Pennsylvania 15219, United States.
Eva NagyDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine , Pittsburgh, Pennsylvania 15219, United States.
Daniel J WilsonCenter for Drug Design, Academic Health Center, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Michael A ParniakDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine , Pittsburgh, Pennsylvania 15219, United States.
Stefan G SarafianosDepartment of Molecular Microbiology and Immunology and Department of Biochemistry, University of Missouri School of Medicine, Christopher S. Bond Life Sciences Center , Columbia, Missouri 65211, United States.
Zhengqiang WangCenter for Drug Design, Academic Health Center, University of Minnesota , Minneapolis, Minnesota 55455, United States.
University of Minnesota · USUniversity of Pittsburgh · USUniversity of Missouri · US

Funding

Novel antivirals targeting the RNase H activity of HIV reverse transcriptaseR01AI100890 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI SARAFIANOS, STEFAN G, WANG, ZHENGQIANG · 2012 to 2016
$3.6M
NIAID NIH HHS R01 AI100890
6 · The paper itself

Abstract

Targeting the clinically unvalidated reverse transcriptase (RT) associated ribonuclease H (RNase H) for human immunodeficiency virus (HIV) drug discovery generally entails chemotypes capable of chelating two divalent metal ions in the RNase H active site. The hydroxypyridonecarboxylic acid scaffold has been implicated in inhibiting homologous HIV integrase (IN) and influenza endonuclease via metal chelation. We report herein the design, synthesis, and biological evaluations of a novel variant of the hydroxypyridonecarboxylic acid scaffold featuring a crucial N-1 benzyl or biarylmethyl moiety. Biochemical studies show that most analogues consistently inhibited HIV RT-associated RNase H in the low micromolar range in the absence of significant inhibition of RT polymerase or IN. One compound showed reasonable cell-based antiviral activity (EC50 = 10 μM). Docking and crystallographic studies corroborate favorable binding to the active site of HIV RNase H, providing a basis for the design of more potent analogues.

Indexed as

Drug DesignCyclobutanesDose-Response Relationship, DrugHIV Reverse TranscriptaseHumansMolecular Docking SimulationMolecular StructurePyridinesReverse Transcriptase InhibitorsRibonuclease H, Human Immunodeficiency VirusStructure-Activity Relationship3-(hydroxy(pyridin-2-yl)methyl)-1-methyl-3-(4-(trifluoromethyl)pyridin-2-yl)cyclobutanolCyclobutanesHIV Reverse TranscriptasePyridinesReverse Transcriptase InhibitorsRibonuclease H, Human Immunodeficiency Virus

Identifiers

PMID27094954
PMCPMC4882222
OpenAlexW2340892054

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.