Evidence map›Paper›PMID 27094846›Full record

ArticleScientific reports2016

Isolation and molecular characterisation of Achromobacter phage phiAxp-3, an N4-like bacteriophage.

Yanyan Ma, Erna Li, Zhizhen Qi, Huan Li, Xiao Wei, Weishi Lin, Ruixiang Zhao, Aimin Jiang, Huiying Yang, Zhe Yin and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 42 citations in OpenAlex.

  1. An N4-likeJournal of bacteriology · 2026
    Article
  2. Article
  3. An N4-likebioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. CompoundingViruses · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. International journal of molecular sciences · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. A case of meningitis due toThe Pan African medical journal · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Yanyan MaCollege of Food Science, Henan Institute of Science and Technology, Xinxiang, 453003, China.
Erna LiCollege of Food Science, South China Agricultural University, Guangzhou, 510642, China.
Zhizhen QiQinghai Institute for Endemic Disease Prevention and Control of Qinghai Province, Xining, 810000, China.
Huan LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Xiao WeiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Weishi LinInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Ruixiang ZhaoCollege of Food Science, Henan Institute of Science and Technology, Xinxiang, 453003, China.
Aimin JiangCollege of Food Science, South China Agricultural University, Guangzhou, 510642, China.
Huiying YangState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Zhe YinState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, 100071, China.
Jing YuanInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Xiangna ZhaoInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, Beijing, 100071, China.
Academy of Military Medical Sciences · CNHenan Institute of Science and Technology · CNInstitute of Microbiology · CNSouth China Agricultural University · CNQinghai Institute for Endemic Diease Prevention and Control · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Achromobacter xylosoxidans, an opportunistic pathogen, is responsible for various nosocomial and community-acquired infections. We isolated phiAxp-3, an N4-like bacteriophage that infects A. xylosoxidans, from hospital waste and studied its genomic and biological properties. Transmission electron microscopy revealed that, with a 67-nm diameter icosahedral head and a 20-nm non-contractile tail, phiAxp-3 has features characteristic of Podoviridae bacteriophages (order Caudovirales). With a burst size of 9000 plaque-forming units and a latent period of 80 min, phiAxp-3 had a host range limited to only four A. xylosoxidans strains of the 35 strains that were tested. The 72,825 bp phiAxp-3 DNA genome, with 416-bp terminal redundant ends, contains 80 predicted open reading frames, none of which are related to virulence or drug resistance. Genome sequence comparisons place phiAxp-3 more closely with JWAlpha and JWDelta Achromobacter phages than with other N4 viruses. Using proteomics, we identified 25 viral proteins from purified phiAxp-3 particles. Notably, investigation of the phage phiAxp-3 receptor on the surface of the host cell revealed that lipopolysaccharide serves as the receptor for the adsorption of phage phiAxp-3. Our findings advance current knowledge about A. xylosoxidans phages in an age where alternative therapies to combat antibiotic-resistant bacteria are urgently needed.

Indexed as

Genome, ViralGenomicsBacteriophagesComputational BiologyDNA ReplicationGene OrderGenes, ViralHost SpecificityHydrogen-Ion ConcentrationMolecular Sequence AnnotationPhylogenyReceptors, VirusTemperatureTranscription, GeneticVirionReceptors, Virus

Identifiers

PMID27094846
PMCPMC4837373
OpenAlexW2336312757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.