Evidence map›Paper›PMID 27093649›Full record

ArticleProteins2016

NMR identification of the binding surfaces involved in the Salmonella and Shigella Type III secretion tip-translocon protein-protein interactions.

Andrew C McShan, Kawaljit Kaur, Srirupa Chatterjee, Kevin M Knight, Roberto N De Guzman

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Andrew C McShanDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045.
Kawaljit KaurDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045.
Srirupa ChatterjeeDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, 63110.
Kevin M KnightDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, 27599.
Roberto N De GuzmanDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045.
University of Kansas · USUniversity of North Carolina at Chapel Hill · USWashington University in St. Louis · US

Funding

U of Kansas/Haskell Indian Nations U.IRACDA ProjectK12GM063651 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI DE GUZMAN, ROBERTO N · 2002 to 2022
$10.0M
Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
PHARMACEUTICAL ASPECTS OF BIOTECHNOLOGY TRAININGT32GM008359 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI SIAHAAN, TERUNA J., VOLKIN, DAVID · 1989 to 2018
$5.0M
NMR studies of bacterial needle and tip proteinsR01AI074856 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DE GUZMAN, ROBERTO N · 2008 to 2018
$3.6M
NIAID NIH HHS R01 AI074856NIGMS NIH HHS K12 GM063651NIGMS NIH HHS P30 GM110761NIGMS NIH HHS T32 GM008359
6 · The paper itself

Abstract

The type III secretion system (T3SS) is essential for the pathogenesis of many bacteria including Salmonella and Shigella, which together are responsible for millions of deaths worldwide each year. The structural component of the T3SS consists of the needle apparatus, which is assembled in part by the protein-protein interaction between the tip and the translocon. The atomic detail of the interaction between the tip and the translocon proteins is currently unknown. Here, we used NMR methods to identify that the N-terminal domain of the Salmonella SipB translocon protein interacts with the SipD tip protein at a surface at the distal region of the tip formed by the mixed α/β domain and a portion of its coiled-coil domain. Likewise, the Shigella IpaB translocon protein and the IpaD tip protein interact with each other using similar surfaces identified for the Salmonella homologs. Furthermore, removal of the extreme N-terminal residues of the translocon protein, previously thought to be important for the interaction, had little change on the binding surface. Finally, mutations at the binding surface of SipD reduced invasion of Salmonella into human intestinal epithelial cells. Together, these results reveal the binding surfaces involved in the tip-translocon protein-protein interaction and advance our understanding of the assembly of the T3SS needle apparatus. Proteins 2016; 84:1097-1107. © 2016 Wiley Periodicals, Inc.

Indexed as

Antigens, BacterialBacterial ProteinsBinding SitesCell LineEpithelial CellsGene ExpressionHumansMembrane ProteinsMutationProtein BindingProtein Interaction Domains and MotifsProtein Structure, SecondaryRecombinant ProteinsSalmonellaShigellaType III Secretion SystemsAntigens, BacterialBacterial Proteinsinvasion protein B, Salmonella typhimuriumipaB protein, ShigellaIpaD protein, Shigella flexneriMembrane ProteinsRecombinant ProteinsSspD protein, Salmonella typhimuriumType III Secretion SystemsIpaBIpaDNMR spectroscopySipBSipDtiptransloconType III secretion system

Identifiers

PMID27093649
PMCPMC5261137
OpenAlexW2401687123

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.