Evidence map›Paper›PMID 27092297›Full record

ArticleFrontiers in cellular and infection microbiology2016

Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural Landscape.

Stephanie Nadya, Pascal Delaquis, Jessica Chen, Kevin Allen, Roger P Johnson, Kim Ziebell, Chad Laing, Victor Gannon, Susan Bach, Edward Topp

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Prevalence of STEC virulence markers andFrontiers in microbiology · 2024
    Article
  3. Prophage Diversity AcrossFrontiers in microbiology · 2022
    Article
  4. Antibiotic Resistance in Shiga ToxigenicAntibiotics (Basel, Switzerland) · 2021
    Article
  5. Multi-Year Persistence of VerotoxigenicFrontiers in microbiology · 2018
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Stephanie NadyaFood, Nutrition and Health, Faculty of Land and Food Systems, University of British Columbia Vancouver, BC, Canada.
Pascal DelaquisAgriculture and Agri-Food Canada, Summerland Research and Development Centre Summerland, BC, Canada.
Jessica ChenFood, Nutrition and Health, Faculty of Land and Food Systems, University of British Columbia Vancouver, BC, Canada.
Kevin AllenFood, Nutrition and Health, Faculty of Land and Food Systems, University of British Columbia Vancouver, BC, Canada.
Roger P JohnsonPublic Health Agency of Canada, National Microbiology Laboratory at Guelph Guelph, ON, Canada.
Kim ZiebellPublic Health Agency of Canada, National Microbiology Laboratory at Guelph Guelph, ON, Canada.
Chad LaingLaboratory for Foodborne Zoonoses, Public Health Agency of Canada Lethbridge, AB, Canada.
Victor GannonLaboratory for Foodborne Zoonoses, Public Health Agency of Canada Lethbridge, AB, Canada.
Susan BachAgriculture and Agri-Food Canada, Summerland Research and Development Centre Summerland, BC, Canada.
Edward ToppAgriculture and Agri-Food Canada, London Research and Development Centre London, ON, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A hydrophobic grid membrane filtration-Shiga toxin immunoblot method was used to examine the prevalence of Shiga toxin-producing Escherichia coli (STEC) in four watersheds located in the Lower Mainland of British Columbia, Canada, a region characterized by rapid urbanization and intensive agricultural activity. STEC were recovered from 21.6, 23.2, 19.5, and 9.2% of surface water samples collected monthly from five sites in each watershed over a period of 1 year. Overall prevalence was subject to seasonal variation however, ranging between 13.3% during fall months and 34.3% during winter months. STEC were also recovered from 23.8% of sediment samples collected in one randomly selected site. One hundred distinct STEC isolates distributed among 29 definitive and 4 ambiguous or indeterminate serotypes were recovered from water and sediments, including isolates from Canadian "priority" serogroups O157 (3), O26 (4), O103 (5), and O111 (7). Forty seven isolates were further characterized by analysis of whole genome sequences to detect Shiga toxin gene (stx 1 and stx 2), intimin gene (eaeA) allelic variants and acquired virulence factors. These analyses collectively showed that surface waters from the region support highly diverse STEC populations that include strains with virulence factors commonly associated with human pathotypes. The present work served to characterize the microbiological hazard implied by STEC to support future assessments of risks to public health arising from non-agricultural and agricultural uses of surface water resources in the region.

Indexed as

Adhesins, BacterialAgricultureBacterial Typing TechniquesBase SequenceBritish ColumbiaDNA, BacterialEscherichia coli ProteinsGenome, BacterialGeologic SedimentsHumansPolymerase Chain ReactionSeasonsSequence Analysis, DNAShiga-Toxigenic Escherichia coliShiga Toxin 1Shiga Toxin 2Adhesins, BacterialDNA, BacterialeaeA protein, E coliEscherichia coli ProteinsShiga Toxin 1Shiga Toxin 2prevalencesedimentShiga toxin-producing E. coli (STEC)surface waterwhole-genome sequencing

Identifiers

PMID27092297
PMCPMC4820441

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.