Evidence map›Paper›PMID 27091363›Full record

ArticleBMC plant biology2016

A DUF-246 family glycosyltransferase-like gene affects male fertility and the biosynthesis of pectic arabinogalactans.

Solomon Stonebloom, Berit Ebert, Guangyan Xiong, Sivakumar Pattathil, Devon Birdseye, Jeemeng Lao, Markus Pauly, Michael G Hahn, Joshua L Heazlewood, Henrik Vibe Scheller

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

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  12. Signaling at Physical Barriers during Pollen-Pistil Interactions.International journal of molecular sciences · 2021
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  13. A Pipeline towards the Biochemical Characterization of theInternational journal of molecular sciences · 2021
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  14. Cell Wall Compositions ofFrontiers in plant science · 2021
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Solomon StonebloomJoint BioEnergy Institute and Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Berit EbertJoint BioEnergy Institute and Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Guangyan XiongEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA.
Sivakumar PattathilComplex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602-4712, USA.
Devon BirdseyeJoint BioEnergy Institute and Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Jeemeng LaoJoint BioEnergy Institute and Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Markus PaulyEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA.
Michael G HahnComplex Carbohydrate Research Center, University of Georgia, Athens, GA, 30602-4712, USA.
Joshua L HeazlewoodJoint BioEnergy Institute and Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Henrik Vibe SchellerJoint BioEnergy Institute and Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA. hscheller@lbl.gov.
Joint BioEnergy Institute · USUniversity of California, Berkeley · USUniversity of Georgia · USEnergy Biosciences Institute · USLawrence Berkeley National Laboratory · USUniversity of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPectins are a group of structurally complex plant cell wall polysaccharides whose biosynthesis and function remain poorly understood. The pectic polysaccharide rhamnogalacturonan-I (RG-I) has two types of arabinogalactan side chains, type-I and type-II arabinogalactans. To date few enzymes involved in the biosynthesis of pectin have been described. Here we report the identification of a highly conserved putative glycosyltransferase encoding gene, Pectic ArabinoGalactan synthesis-Related (PAGR), affecting the biosynthesis of RG-I arabinogalactans and critical for pollen tube growth.

resultsT-DNA insertions in PAGR were identified in Arabidopsis thaliana and were found to segregate at a 1:1 ratio of heterozygotes to wild type. We were unable to isolate homozygous pagr mutants as pagr mutant alleles were not transmitted via pollen. In vitro pollen germination assays revealed reduced rates of pollen tube formation in pollen from pagr heterozygotes. To characterize a loss-of-function phenotype for PAGR, the Nicotiana benthamiana orthologs, NbPAGR-A and B, were transiently silenced using Virus Induced Gene Silencing. NbPAGR-silenced plants exhibited reduced internode and petiole expansion. Cell wall materials from NbPAGR-silenced plants had reduced galactose content compared to the control. Immunological and linkage analyses support that RG-I has reduced type-I arabinogalactan content and reduced branching of the RG-I backbone in NbPAGR-silenced plants. Arabidopsis lines overexpressing PAGR exhibit pleiotropic developmental phenotypes and the loss of apical dominance as well as an increase in RG-I type-II arabinogalactan content.

conclusionsTogether, results support a function for PAGR in the biosynthesis of RG-I arabinogalactans and illustrate the essential roles of these polysaccharides in vegetative and reproductive plant growth.

Indexed as

ArabidopsisArabidopsis ProteinsFertilityGalactansGene Expression Regulation, PlantGene SilencingGenotypeGlycosyltransferasesGolgi ApparatusImmunoblottingLuminescent ProteinsMicroscopy, ConfocalMutationNicotianaPectinsPhenotypeArabidopsis ProteinsarabinogalactanGalactansGlycosyltransferasesLuminescent ProteinsPAGR protein, ArabidopsisPectinsrhamnogalacturonan IArabidopsis thalianaCell wallNicotiana benthamianaPectinPollen tubeRhamnogalacturonan-I

Identifiers

PMID27091363
PMCPMC4836069
OpenAlexW2342117307

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.