Evidence map›Paper›PMID 27091298›Full record

ArticleMolecular and cellular endocrinology2016

Analysis of specific RNA in cultured cells through quantitative integration of q-PCR and N-SIM single cell FISH images: Application to hormonal stimulation of StAR transcription.

Jinwoo Lee, Yee Hoon Foong, Ibrahim Musaitif, Tiegang Tong, Colin Jefcoate

Abstract read
In one paragraph

Article in Molecular and cellular endocrinology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Single-cell resolution uncovers neighboring cell subtypes that share steroidogenic capacity during fetal testis development.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  11. ACTH Action on StAR Biology.Frontiers in neuroscience · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jinwoo LeeDepartment of Cell and Regenerative Biology, University of Wisconsin, Madison, WI 53706, United States; Endocrinology and Reproductive Physiology Program, University of Wisconsin, Madison, WI 53706, United States. Electronic address: jwlee7@wisc.edu.
Yee Hoon FoongDepartment of Cell and Regenerative Biology, University of Wisconsin, Madison, WI 53706, United States.
Ibrahim MusaitifDepartment of Cell and Regenerative Biology, University of Wisconsin, Madison, WI 53706, United States.
Tiegang TongDepartment of Cell and Regenerative Biology, University of Wisconsin, Madison, WI 53706, United States.
Colin JefcoateDepartment of Cell and Regenerative Biology, University of Wisconsin, Madison, WI 53706, United States; Endocrinology and Reproductive Physiology Program, University of Wisconsin, Madison, WI 53706, United States; Molecular and Environmental Toxicology Center, University of Wisconsin, Madison, WI 53706, United States.
University of Wisconsin–Madison · US

Funding

Cytochrome P4501B1 and basal liver PPARa activityR01DK090249 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI JEFCOATE, COLIN ROBERT · 2012 to 2016
$1.6M
StAR expression: Integration of Transcription with regulation via the mRNA 3'UTRR01DK074819 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI JEFCOATE, COLIN ROBERT · 2008 to 2012
$1.6M
NIDDK NIH HHS R01 DK074819NIDDK NIH HHS R01 DK090249
6 · The paper itself

Abstract

The steroidogenic acute regulatory protein (StAR) has been proposed to serve as the switch that can turn on/off steroidogenesis. We investigated the events that facilitate dynamic StAR transcription in response to cAMP stimulation in MA-10 Leydig cells, focusing on splicing anomalies at StAR gene loci. We used 3' reverse primers in a single reaction to respectively quantify StAR primary (p-RNA), spliced (sp-RNA/mRNA), and extended 3' untranslated region (UTR) transcripts, which were quantitatively imaged by high-resolution fluorescence in situ hybridization (FISH). This approach delivers spatio-temporal resolution of initiation and splicing at single StAR loci, and transfers individual mRNA molecules to cytoplasmic sites. Gene expression was biphasic, initially showing slow splicing, transitioning to concerted splicing. The alternative 3.5-kb mRNAs were distinguished through the use of extended 3'UTR probes, which exhibited distinctive mitochondrial distribution. Combining quantitative PCR and FISH enables imaging of localization of RNA expression and analysis of RNA processing rates.

Indexed as

Imaging, Three-DimensionalTranscription, Genetic3' Untranslated Regions8-Bromo Cyclic Adenosine MonophosphateAnimalsBase PairingCells, CulturedIn Situ Hybridization, FluorescenceMiceMicroscopyMitochondriaPhosphoproteinsPolyadenylationReal-Time Polymerase Chain ReactionRNARNA, Messenger3' Untranslated Regions8-Bromo Cyclic Adenosine MonophosphatePhosphoproteinsRNARNA, MessengerSteroidogenic Acute Regulatory ProteinFluorescence in situ hybridizationPCRSplicingStARTranscription

Identifiers

PMID27091298
PMCPMC6181224
OpenAlexW2336558472

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.