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ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2016

Genetic mapping of SrCad and SNP marker development for marker-assisted selection of Ug99 stem rust resistance in wheat.

Mulualem T Kassa, Frank M You, Tom G Fetch, Pierre Fobert, Andrew Sharpe, Curtis J Pozniak, James G Menzies, Mark C Jordan, Gavin Humphreys, Tingting Zhu and 3 more

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Identification of Sr67, a new gene for stem rust resistance in KU168-2 located close to the Sr13 locus in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  3. Article
  4. Genetic mapping of the wheat leaf rust resistance gene Lr2a and its importance in Canadian wheat cultivars.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Interactions BetweenFrontiers in plant science · 2022
    Article
  9. Article
  10. Genetic mapping of Stb19, a new resistance gene to Zymoseptoria tritici in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Fine mapping of the stem rust resistance gene SrTA10187.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Mulualem T KassaNational Research Council, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9, Canada.
Frank M YouAgriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Route 100, Morden, MB, R6M 1Y5, Canada.
Tom G FetchAgriculture and Agri-Food Canada, Brandon Research and Development Centre, Brandon, MB, R7A 5Y3, Canada.
Pierre FobertNational Research Council, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9, Canada.
Andrew SharpeNational Research Council, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9, Canada.
Curtis J PozniakCrop Development Centre, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK, S7N 5A8, Canada.
James G MenziesAgriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Route 100, Morden, MB, R6M 1Y5, Canada.
Mark C JordanAgriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Route 100, Morden, MB, R6M 1Y5, Canada.
Gavin HumphreysAgriculture and Agri-Food Canada, Ottawa Research and Development Centre, 960 Carling Ave., Ottawa, ON, K1A 0C6, Canada.
Tingting ZhuDepartment of Plant Sciences, University of California, 276 Hunt Hall and 3111 PES 1 Shields Ave., Davis, CA, 95616, USA.
Ming-Cheng LuoDepartment of Plant Sciences, University of California, 276 Hunt Hall and 3111 PES 1 Shields Ave., Davis, CA, 95616, USA.
Curt A McCartneyAgriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Route 100, Morden, MB, R6M 1Y5, Canada.
Colin W HiebertAgriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Route 100, Morden, MB, R6M 1Y5, Canada. colin.hiebert@agr.gc.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageNew SNP markers that can be used for marker-assisted selection and map-based cloning saturate the chromosome region carrying SrCad , a wheat gene that confers resistance to Ug99 stem rust. Wheat stem rust, caused by Puccinia graminis f. sp. tritici, is a devastating disease of wheat worldwide. Development of cultivars with effective resistance has been the primary means to control this disease, but the appearance of new virulent strains such as Ug99 has rendered most wheat varieties vulnerable. The stem rust resistance gene SrCad located on chromosome arm 6DS has provided excellent resistance to various strains of Ug99 in field nurseries conducted in Njoro, Kenya since 2005. Three genetic populations were used to identify SNP markers closely linked to the SrCad locus. Of 220 SNP markers evaluated, 27 were found to be located within a 2 cM region surrounding SrCad. The diagnostic potential of these SNPs was evaluated in a diverse set of 50 wheat lines that were primarily of Canadian origin with known presence or absence of SrCad. Three SNP markers tightly linked proximally to SrCad and one SNP that co-segregated with SrCad were completely predictive of the presence or absence of SrCad. These markers also differentiated SrCad from Sr42 and SrTmp which are also located in the same region of chromosome arm 6DS. These markers should be useful in marker-assisted breeding to develop new wheat varieties containing SrCad-based resistance to Ug99 stem rust.

Indexed as

Chromosome MappingPolymorphism, Single NucleotideBasidiomycotaDisease ResistanceGenetic LinkageGenetic MarkersGenotyping TechniquesHaplotypesPhenotypePlant BreedingPlant DiseasesTriticumGenetic Markers

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.