Evidence map›Paper›PMID 27089380›Full record

ArticleNature immunology2016

Innate-like functions of natural killer T cell subsets result from highly divergent gene programs.

Isaac Engel, Grégory Seumois, Lukas Chavez, Daniela Samaniego-Castruita, Brandie White, Ashu Chawla, Dennis Mock, Pandurangan Vijayanand, Mitchell Kronenberg

Erratum issuedAbstract read
In one paragraph

Article in Nature immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 184 papers.

0numbers the graph read from it
0cells of the map it votes in
184citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

184 citing papers in PubMed.

  1. Allergen-specific IgGThe Journal of allergy and clinical immunology · 2020
    Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Metabolic control of innate-like T cells.Nature reviews. Immunology · 2026
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Innateness transcriptome gradients characterize mouse T lymphocyte populations.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Primordial Cells Bridging the Gap Between Innate and Adaptive Immunity.Advances in experimental medicine and biology · 2025
    Review

124 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Isaac EngelLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.
Grégory SeumoisLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.ORCID 0000-0002-8164-6852
Lukas ChavezLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.
Daniela Samaniego-CastruitaLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.
Brandie WhiteLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.
Ashu ChawlaLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.
Dennis MockDavid Geffen School of Medicine, University of California Los Angeles, Los Angeles, California, USA.
Pandurangan VijayanandLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.
Mitchell KronenbergLa Jolla Institute for Allergy &Immunology, La Jolla, California, USA.

Funding

Epigenomics of T cells and innate immune cells in human asthmaR01HL114093 · NHLBI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI ARSHAD, SYED HASAN, PETERS, BJOERN · 2011 to 2020
$8.5M
Understanding mechanisms in specific immunotherapy (SIT)U19AI100275 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SETTE, ALESSANDRO · 2012 to 2017
$8.1M
Development and Function of NKT CellsR37AI071922 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI KRONENBERG, MITCHELL · 2006 to 2015
$4.9M
Differentiation of subsets of NKT cellsR01AI071922 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI KRONENBERG, MITCHELL · 2016 to 2020
$2.7M
The role of natural killer T cells in the innate response to lung infectionR01AI105215 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI KRONENBERG, MITCHELL · 2014 to 2018
$2.2M
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
NHLBI NIH HHS R01 HL114093NIAID NIH HHS R01 AI071922NIAID NIH HHS R01 AI105215NIAID NIH HHS R37 AI071922NIAID NIH HHS U19 AI100275
6 · The paper itself

Abstract

Natural killer T cells (NKT cells) have stimulatory or inhibitory effects on the immune response that can be attributed in part to the existence of functional subsets of NKT cells. These subsets have been characterized only on the basis of the differential expression of a few transcription factors and cell-surface molecules. Here we have analyzed purified populations of thymic NKT cell subsets at both the transcriptomic level and epigenomic level and by single-cell RNA sequencing. Our data indicated that despite their similar antigen specificity, the functional NKT cell subsets were highly divergent populations with many gene-expression and epigenetic differences. Therefore, the thymus 'imprints' distinct gene programs on subsets of innate-like NKT cells that probably impart differences in proliferative capacity, homing, and effector functions.

Indexed as

Gene Expression RegulationImmunity, InnateAnimalsAntigens, CD1dCell MovementCell ProliferationCells, CulturedEpigenesis, GeneticJumonji Domain-Containing Histone DemethylasesLymphocyte SubsetsMiceMice, Inbred BALB CMice, Inbred C57BLNatural Killer T-CellsSequence Analysis, RNASingle-Cell AnalysisAntigens, CD1dCd1d1 protein, mouseJumonji Domain-Containing Histone DemethylasesKdm6b protein, mouse

Identifiers

PMID27089380
PMCPMC4944658

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.