Evidence map›Paper›PMID 27089177›Full record

ArticleNature genetics2016

A missense variant in FGD6 confers increased risk of polypoidal choroidal vasculopathy.

Lulin Huang, Houbin Zhang, Ching-Yu Cheng, Feng Wen, Pancy O S Tam, Peiquan Zhao, Haoyu Chen, Zheng Li, Lijia Chen, Zhengfu Tai and 44 more

Abstract read
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In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 79 citations in OpenAlex.

  1. Pooled it
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  4. Article
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  6. Article
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  14. Review
  15. Association of HERPUD1 genetic variant rs2217332 with age-related macular degeneration and polypoidal choroidal vasculopathy in an Indian cohort.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2023
    Article
  16. Article
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  18. Profile of Dr. Zhenglin Yang.Science China. Life sciences · 2023
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

54 authors at 13 institutions in 5 countries.

Lulin HuangKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Houbin ZhangKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Ching-Yu ChengSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Feng WenState Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China.
Pancy O S TamState Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China.
Peiquan ZhaoDepartment of Ophthalmology, Xinhua Hospital, Shanghai Jiaotong University, Shanghai, China.
Haoyu ChenJoint Shantou International Eye Center, Shantou University and Chinese University of Hong Kong, Shantou, China.ORCID 0000-0003-0676-4610
Zheng LiSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.ORCID 0000-0002-7060-2213
Lijia ChenDepartment of Ophthalmology and Visual Sciences, Chinese University of Hong Kong, Hong Kong, China.
Zhengfu TaiKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Kenji YamashiroDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan.ORCID 0000-0001-9354-8558
Shaoping DengKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Xianjun ZhuKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Weiqi ChenJoint Shantou International Eye Center, Shantou University and Chinese University of Hong Kong, Shantou, China.
Li CaiKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Fang LuKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Yuanfeng LiKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Chui-Ming G CheungSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.ORCID 0000-0003-3358-3516
Yi ShiKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Masahiro MiyakeDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Yin LinKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Bo GongKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Xiaoqi LiuKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Kar-Seng SimSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.ORCID 0000-0002-3822-7759
Jiyun YangKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Keisuke MoriDepartment of Ophthalmology, Saitama Medical University, Iruma, Japan.
Xiongzhe ZhangState Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China.
Peter D CackettSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Motokazu TsujikawaDepartment of Ophthalmology, Osaka University Medical School, Osaka, Japan.
Kohji NishidaDepartment of Ophthalmology, Osaka University Medical School, Osaka, Japan.
Fang HaoKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Shi MaKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
He LinKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Jing ChengKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Ping FeiDepartment of Ophthalmology, Xinhua Hospital, Shanghai Jiaotong University, Shanghai, China.
Timothy Y Y LaiDepartment of Ophthalmology and Visual Sciences, Chinese University of Hong Kong, Hong Kong, China.
Sibo TangState Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China.
Augustinus LaudeNational Health care Group Eye Institute, Tan Tock Seng Hospital, Singapore.
Satoshi InoueDivision of Gene Regulation and Signal Transduction, Research Center for Genomic Medicine, Saitama Medical University, Saitama, Japan.
Ian Y YeoSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Yoichi SakuradaDepartment of Surgery, Division of Ophthalmology, Kobe University Graduate School of Medicine, Kobe, Japan.
Yu ZhouKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Hiroyuki IijimaDepartment of Ophthalmology, Faculty of Medicine, University of Yamanashi, Yamanashi, Japan.
Shigeru HondaDepartment of Surgery, Division of Ophthalmology, Kobe University Graduate School of Medicine, Kobe, Japan.
Chuntao LeiDepartment of Ophthalmology, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, Chengdu, China.
Lin ZhangKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Hong ZhengKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Dan JiangKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Xiong ZhuKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
Tien-Ying WongSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Chiea-Chuen KhorSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Chi-Pui PangDepartment of Ophthalmology and Visual Sciences, Chinese University of Hong Kong, Hong Kong, China.
Nagahisa YoshimuraDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Zhenglin YangKey Laboratory for Human Disease Gene Study, Sichuan Academy of Medical Sciences and Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.
University of Electronic Science and Technology of China · CNChinese University of Hong Kong · HKNational University of Singapore · SGSun Yat-sen University · CNKyoto University · JPKobe University · JPSaitama Medical University · JPThe University of Osaka · JPXinHua Hospital · CNSichuan Academy of Medical Sciences & Sichuan Provincial People's Hospital · CNSingapore National Eye Center · SGTan Tock Seng Hospital · SGUniversity of Yamanashi · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polypoidal choroidal vasculopathy (PCV), a subtype of 'wet' age-related macular degeneration (AMD), constitutes up to 55% of cases of wet AMD in Asian patients. In contrast to the choroidal neovascularization (CNV) subtype, the genetic risk factors for PCV are relatively unknown. Exome sequencing analysis of a Han Chinese cohort followed by replication in four independent cohorts identified a rare c.986A>G (p.Lys329Arg) variant in the FGD6 gene as significantly associated with PCV (P = 2.19 × 10(-16), odds ratio (OR) = 2.12) but not with CNV (P = 0.26, OR = 1.13). The intracellular localization of FGD6-Arg329 is distinct from that of FGD6-Lys329. In vitro, FGD6 could regulate proangiogenic activity, and oxidized phospholipids increased expression of FGD6. FGD6-Arg329 promoted more abnormal vessel development in the mouse retina than FGD6-Lys329. Collectively, our data suggest that oxidized phospholipids and FGD6-Arg329 might act synergistically to increase susceptibility to PCV.

Indexed as

Mutation, MissenseCells, CulturedChinaCohort StudiesEndothelium, VascularEthnicityGene Expression ProfilingGuanine Nucleotide Exchange FactorsHumansPolymorphism, Single NucleotideSubcellular FractionsWet Macular DegenerationFGD6 protein, humanGuanine Nucleotide Exchange Factors

Identifiers

PMID27089177
OpenAlexW2335860304

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.