Evidence map›Paper›PMID 27087983›Full record

ArticleJournal of animal science and technology2016

Whole-transcriptome analyses of the Sapsaree, a Korean natural monument, before and after exercise-induced stress.

Ji-Eun Kim, Junkyung Choe, Jeong Hee Lee, Woong Bom Kim, Whan Cho, Ji Hong Ha, Ki Jin Kwon, Kook Il Han, Sung-Hwan Jo

Open access · goldAbstract read
In one paragraph

Article in Journal of animal science and technology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ji-Eun KimSEEDERS Inc, Daejeon, 34015 Republic of Korea.
Junkyung ChoeSEEDERS Inc, Daejeon, 34015 Republic of Korea.
Jeong Hee LeeSEEDERS Inc, Daejeon, 34015 Republic of Korea.
Woong Bom KimSEEDERS Inc, Daejeon, 34015 Republic of Korea.
Whan ChoSEEDERS Inc, Daejeon, 34015 Republic of Korea.
Ji Hong HaThe Korean Sapsaree Foundation, Gyeongsan, Gyeongbuk 38412 Republic of Korea.
Ki Jin KwonThe Korean Sapsaree Foundation, Gyeongsan, Gyeongbuk 38412 Republic of Korea.
Kook Il HanDepartment of Animal training and event, Daekyeung University, Gyeongsan, Gyeongbuk 38547 Republic of Korea.
Sung-Hwan JoSEEDERS Inc, Daejeon, 34015 Republic of Korea.
Seeders (South Korea) · KRDaekyeung University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Sapsaree (Canis familiaris) is a Korean native dog that is very friendly, protective, and loyal to its owner, and is registered as a natural monument in Korea (number: 368). To investigate large-scale gene expression profiles and identify the genes related to exercise-induced stress in the Sapsaree, we performed whole-transcriptome RNA sequencing and analyzed gene expression patterns before and after exercise performance.

resultsWe identified 525 differentially expressed genes in ten dogs before and after exercise. Gene Ontology classification and KEGG pathway analysis revealed that the genes were mainly involved in metabolic processes, such as programmed cell death, protein metabolic process, phosphatidylinositol signaling system, and cation binding in cytoplasm. The ten Sapsarees could be divided into two groups based on the gene expression patterns before and after exercise. The two groups were significantly different in terms of their basic body type (p ≤ 0.05). Seven representative genes with significantly different expression patterns before and after exercise between the two groups were chosen and characterized.

conclusionsBody type had a significant effect on the patterns of differential gene expression induced by exercise. Whole-transcriptome sequencing is a useful method for investigating the biological characteristics of the Sapsaree and the large-scale genomic differences of canines in general.

Indexed as

BioinformaticsExerciseNGSPhysical stressRNA-SeqSapsareeTranscriptome

Identifiers

PMID27087983
PMCPMC4832554
OpenAlexW2315982888

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.