Evidence map›Paper›PMID 27087938›Full record

ArticleGigaScience2016

High-throughput identification of novel conotoxins from the Chinese tubular cone snail (Conus betulinus) by multi-transcriptome sequencing.

Chao Peng, Ge Yao, Bing-Miao Gao, Chong-Xu Fan, Chao Bian, Jintu Wang, Ying Cao, Bo Wen, Yabing Zhu, Zhiqiang Ruan and 13 more

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 67 citations in OpenAlex.

  1. Structural similarities reveal an expansive conotoxin family with a two-finger toxin fold.Protein science : a publication of the Protein Society · 2025
    Article
  2. Review
  3. Article
  4. Review
  5. In Silico Conotoxin Studies: Progress and Prospects.Molecules (Basel, Switzerland) · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The complete mitochondrial DNA genome of a cone snail,Mitochondrial DNA. Part B, Resources · 2021
    Article
  17. Article
  18. Article
  19. Proteomic analysis of Red SeaThe journal of venomous animals and toxins including tropical diseases · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 2 countries.

Chao PengBGI-Shenzhen, Shenzhen, 518083 China.
Ge YaoResearch Institute of Pharmaceutical Chemistry, Beijing, 102205 China.
Bing-Miao GaoSchool of Pharmaceutical Sciences, Hainan Medical University, Haikou, 571199 China.
Chong-Xu FanResearch Institute of Pharmaceutical Chemistry, Beijing, 102205 China.
Chao BianBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Jintu WangBGI-Shenzhen, Shenzhen, 518083 China.
Ying CaoResearch Institute of Pharmaceutical Chemistry, Beijing, 102205 China.
Bo WenBGI-Shenzhen, Shenzhen, 518083 China.
Yabing ZhuBGI-Shenzhen, Shenzhen, 518083 China.
Zhiqiang RuanBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Xiaofei ZhaoMicro Pharmatech Ltd, Wuhan, 430075 China.
Xinxin YouBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Jie BaiBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Jia LiBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Zhilong LinBGI-Shenzhen, Shenzhen, 518083 China.
Shijie ZouBGI-Shenzhen, Shenzhen, 518083 China.
Xinhui ZhangBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Ying QiuBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Jieming ChenBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China.
Steven L CoonMolecular Genomics Laboratory, National Institutes of Health, Bethesda, MD 20892 USA.
Jiaan YangMicro Pharmatech Ltd, Wuhan, 430075 China.
Ji-Sheng ChenResearch Institute of Pharmaceutical Chemistry, Beijing, 102205 China.
Qiong ShiBGI-Shenzhen, Shenzhen, 518083 China ; Shenzhen Key Laboratory of Marine Genomics, Guangdong Provincial Key Laboratory of Molecular Breeding in Marine Economic Animals, State Key Laboratory of Agricultural Genomics, Shenzhen, 518083 China ; BGI-Zhenjiang Institute of Hydrobiology, Zhenjiang, 212000 China.
BGI Group (China) · CNNational Institutes of Pharmaceutical Research and Development (China) · CNAgricultural Genomics Institute at Shenzhen · CNHainan Medical University · CNInstitute of Hydrobiology · CN

Funding

Molecular Genomics Sequencing Core FacilityZICHD008958 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MAHADEVAN, VIVEK · 2016 to 2025
$19.0M
6 · The paper itself

Abstract

backgroundThe venom of predatory marine cone snails mainly contains a diverse array of unique bioactive peptides commonly referred to as conopeptides or conotoxins. These peptides have proven to be valuable pharmacological probes and potential drugs because of their high specificity and affinity to important ion channels, receptors and transporters of the nervous system. Most previous studies have focused specifically on the conopeptides from piscivorous and molluscivorous cone snails, but little attention has been devoted to the dominant vermivorous species.

resultsThe vermivorous Chinese tubular cone snail, Conus betulinus, is the dominant Conus species inhabiting the South China Sea. The transcriptomes of venom ducts and venom bulbs from a variety of specimens of this species were sequenced using both next-generation sequencing and traditional Sanger sequencing technologies, resulting in the identification of a total of 215 distinct conopeptides. Among these, 183 were novel conopeptides, including nine new superfamilies. It appeared that most of the identified conopeptides were synthesized in the venom duct, while a handful of conopeptides were identified only in the venom bulb and at very low levels.

conclusionsWe identified 215 unique putative conopeptide transcripts from the combination of five transcriptomes and one EST sequencing dataset. Variation in conopeptides from different specimens of C. betulinus was observed, which suggested the presence of intraspecific variability in toxin production at the genetic level. These novel conopeptides provide a potentially fertile resource for the development of new pharmaceuticals, and a pathway for the discovery of new conotoxins.

Indexed as

TranscriptomeAmino Acid SequenceAnimalsChinaConotoxinsConus SnailGene Expression ProfilingGenetic VariationHigh-Throughput Nucleotide SequencingMolecular Sequence DataOceans and SeasPeptidesReverse Transcriptase Polymerase Chain ReactionSequence Analysis, DNASpecies SpecificityConotoxinsPeptidesCone snailConopeptideConotoxinConus betulinusTranscriptomeVenom bulbVenom duct

Identifiers

PMID27087938
PMCPMC4832519
OpenAlexW2341770293

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.