Evidence map›Paper›PMID 27085709›Full record

ArticleFunctional & integrative genomics2016

Genetic and physical mapping of the earliness per se locus Eps-A (m) 1 in Triticum monococcum identifies EARLY FLOWERING 3 (ELF3) as a candidate gene.

M A Alvarez, G Tranquilli, S Lewis, N Kippes, J Dubcovsky

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Article in Functional & integrative genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
18.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 123 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M A AlvarezDepartment of Plant Sciences, University of California, Mail Stop 1, One Shields Avenue, Davis, CA, 95616-8780, USA.
G TranquilliInstituto de Recursos Biológicos, INTA, Villa Udaondo (1686), Hurlingham, Buenos Aires, Argentina.
S LewisInstituto de Recursos Biológicos, INTA, Villa Udaondo (1686), Hurlingham, Buenos Aires, Argentina.
N KippesDepartment of Plant Sciences, University of California, Mail Stop 1, One Shields Avenue, Davis, CA, 95616-8780, USA.
J DubcovskyDepartment of Plant Sciences, University of California, Mail Stop 1, One Shields Avenue, Davis, CA, 95616-8780, USA. jdubcovsky@ucdavis.edu.
Howard Hughes Medical Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat cultivars exposed to optimal photoperiod and vernalization treatments still exhibit differences in flowering time, referred to as earliness per se (Eps). We previously identified the Eps-A (m) 1 locus from Triticum monococcum and showed that the allele from cultivated accession DV92 significantly delays heading time and increases the number of spikelets per spike relative to the allele from wild accession G3116. Here, we expanded a high-density genetic and physical map of the Eps-A (m) 1 region and identified the wheat ortholog of circadian clock regulator EARLY FLOWERING 3 (ELF3) as a candidate gene. No differences in ELF3 transcript levels were found between near-isogenic lines carrying the DV92 and G3116 Eps-A (m) 1 alleles, but the encoded ELF3 proteins differed in four amino acids. These differences were associated with altered transcription profiles of PIF-like, PPD1, and FT1, which are known downstream targets of ELF3. Tetraploid wheat lines with combined truncation mutations in the A- and B-genome copies of ELF3 flowered earlier and had less spikelets per spike than the wild-type control under short- and long-day conditions. Both effects were stronger in a photoperiod-sensitive than in a reduced photoperiod-sensitive background, indicating a significant epistatic interaction between PPD1 and ELF3 (P < 0.0001). By contrast, the introgression of the T. monococcum chromosome segment carrying the Eps-A (m) 1 allele from DV92 into durum wheat delayed flowering and increased the number of spikelets per spike. Taken together, the above results support the hypothesis that ELF3 is Eps-A (m) 1. The ELF3 alleles identified here provide additional tools to modulate reproductive development in wheat.

Indexed as

AllelesChromosome MappingChromosomes, PlantFlowersGene Expression Regulation, PlantGenetic Association StudiesGenome, PlantPhotoperiodPlant ProteinsTriticumPlant ProteinsEarliness per seELF3Flowering timeSpikelet numberTriticum monococcumWheat

Identifiers

PMID27085709
PMCPMC4947483
OpenAlexW2336081929

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.