Evidence map›Paper›PMID 27085186›Full record

ArticleJournal of experimental botany2016

Quantitative proteomics reveals the importance of nitrogen source to control glucosinolate metabolism in Arabidopsis thaliana and Brassica oleracea.

Daniel Marino, Idoia Ariz, Berta Lasa, Enrique Santamaría, Joaquín Fernández-Irigoyen, Carmen González-Murua, Pedro M Aparicio Tejo

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

  1. Pooled it
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  7. Tumorous Stem Development ofPlants (Basel, Switzerland) · 2020
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  11. New Insights onInternational journal of molecular sciences · 2019
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  15. Intra- and inter-specific variations in chitin in lichens along a N-deposition gradient.Environmental science and pollution research international · 2017
    Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Daniel MarinoDepartment of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain Ikerbasque, Basque Foundation for Science, E-48011 Bilbao, Spain daniel.marino@ehu.eus.
Idoia ArizDepartamento de Ciencias del Medio Natural, Universidad Pública de Navarra, Pamplona, Spain Faculdade de Ciências, Centro Ecologia Evolução e Alterações Ambientais, Universidade de Lisboa, Lisboa, Portugal.
Berta LasaDepartamento de Ciencias del Medio Natural, Universidad Pública de Navarra, Pamplona, Spain.
Enrique SantamaríaProteomics Unit, Navarrabiomed, Fundación Miguel Servet, Proteored-ISCIII, Instituto de investigación Sanitaria de Navarra (IdiSNA), Pamplona, Spain.
Joaquín Fernández-IrigoyenProteomics Unit, Navarrabiomed, Fundación Miguel Servet, Proteored-ISCIII, Instituto de investigación Sanitaria de Navarra (IdiSNA), Pamplona, Spain.
Carmen González-MuruaDepartment of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Apdo. 644, E-48080 Bilbao, Spain.
Pedro M Aparicio TejoDepartamento de Ciencias del Medio Natural, Universidad Pública de Navarra, Pamplona, Spain.
Navarrabiomed · ESUniversidad Publica de Navarra · ESIkerbasque · ESUniversity of Lisbon · PTUniversity of the Basque Country · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accessing different nitrogen (N) sources involves a profound adaptation of plant metabolism. In this study, a quantitative proteomic approach was used to further understand how the model plant Arabidopsis thaliana adjusts to different N sources when grown exclusively under nitrate or ammonium nutrition. Proteome data evidenced that glucosinolate metabolism was differentially regulated by the N source and that both TGG1 and TGG2 myrosinases were more abundant under ammonium nutrition, which is generally considered to be a stressful situation. Moreover, Arabidopsis plants displayed glucosinolate accumulation and induced myrosinase activity under ammonium nutrition. Interestingly, these results were also confirmed in the economically important crop broccoli (Brassica oleracea var. italica). Moreover, these metabolic changes were correlated in Arabidopsis with the differential expression of genes from the aliphatic glucosinolate metabolic pathway. This study underlines the importance of nitrogen nutrition and the potential of using ammonium as the N source in order to stimulate glucosinolate metabolism, which may have important applications not only in terms of reducing pesticide use, but also for increasing plants' nutritional value.

Indexed as

Gene ExpressionAmmonium CompoundsArabidopsisBrassicaGlucosinolatesMass SpectrometryMetabolic Networks and PathwaysNitratesNitrogenPlant ProteinsProteomicsAmmonium CompoundsGlucosinolatesNitratesNitrogenPlant ProteinsAmmoniumArabidopsisbroccoliglucosinolatesmyrosinasenitratenitrogen nutritionproteomics.thaliana

Identifiers

PMID27085186
PMCPMC4892723
OpenAlexW2339170955

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.