ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2016
Genome-wide view of genetic diversity reveals paths of selection and cultivar differentiation in peach domestication.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
26 citing papers in PubMed, 59 citations in OpenAlex.
- The PeachSNP170K array facilitates insights into a large-scale population relatedness and genetic impacts on citrate content and flowering time.Communications biology · 2025Article
- Article
- Using Quantitative Trait Locus Mapping and Genomic Resources to Improve Breeding Precision in Peaches: Current Insights and Future Prospects.Plants (Basel, Switzerland) · 2025Review
- Genetic basis of lineage-specific evolution of fruit traits in hexaploid persimmon.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Intercross population study reveals that co-mutation ofZoological research · 2023Article
- Equus roundworms (Parascaris univalens) are undergoing rapid divergence while genes involved in metabolic as well as anthelminic resistance are under positive selection.BMC genomics · 2022Article
- Less is more: natural variation disrupting a miR172 gene at the di locus underlies the recessive double-flower trait in peach (P. persica L. Batsch).BMC plant biology · 2022Article
- Chromosome-level genome assemblies of four wild peach species provide insights into genome evolution and genetic basis of stress resistance.BMC biology · 2022Article
- Identifying sources of metabolomic diversity and reconfiguration in peach fruit: taking notes for quality fruit improvement.FEBS open bio · 2021Review
- Population-scale peach genome analyses unravel selection patterns and biochemical basis underlying fruit flavor.Nature communications · 2021Article
- Recent Large-Scale Genotyping and Phenotyping of Plant Genetic Resources of Vegetatively Propagated Crops.Plants (Basel, Switzerland) · 2021Review
- Association between blooming time and climatic adaptation inEcology and evolution · 2020Article
- Genomic Signatures After Five Generations of Intensive Selective Breeding: Runs of Homozygosity and Genetic Diversity in Representative Domestic and Wild Populations of Turbot (Frontiers in genetics · 2020Article
- Comparative population genomics identified genomic regions and candidate genes associated with fruit domestication traits in peach.Plant biotechnology journal · 2019Article
- Genome-wide variation patterns between landraces and cultivars uncover divergent selection during modern wheat breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers.Molecular ecology · 2019Article
- Discovery of genomic variations by whole-genome resequencing of the North American Araucana chicken.PloS one · 2019Article
- Between domestication and civilization: the role of agriculture and arboriculture in the emergence of the first urban societies.Vegetation history and archaeobotany · 2019Article
- Review
- Genome re-sequencing reveals the evolutionary history of peach fruit edibility.Nature communications · 2018Article
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Domestication and cultivar differentiation are requisite processes for establishing cultivated crops. These processes inherently involve substantial changes in population structure, including those from artificial selection of key genes. In this study, accessions of peach (Prunus persica) and its wild relatives were analysed genome-wide to identify changes in genetic structures and gene selections associated with their differentiation. Analysis of genome-wide informative single-nucleotide polymorphism loci revealed distinct changes in genetic structures and delineations among domesticated peach and its wild relatives and among peach landraces and modern fruit (F) and modern ornamental (O-A) cultivars. Indications of distinct changes in linkage disequilibrium extension/decay and of strong population bottlenecks or inbreeding were identified. Site frequency spectrum- and extended haplotype homozygosity-based evaluation of genome-wide genetic diversities supported selective sweeps distinguishing the domesticated peach from its wild relatives and each F/O-A cluster from the landrace clusters. The regions with strong selective sweeps harboured promising candidates for genes subjected to selection. Further sequence-based evaluation further defined the candidates and revealed their characteristics. All results suggest opportunities for identifying critical genes associated with each differentiation by analysing genome-wide genetic diversity in currently established populations. This approach obviates the special development of genetic populations, which is particularly difficult for long-lived tree crops.
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