Evidence map›Paper›PMID 27085088›Full record

ArticleeLife2016

Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation.

Ryuta Ishimura, Gabor Nagy, Ivan Dotu, Jeffrey H Chuang, Susan L Ackerman

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 153 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
153citing papers in PubMed, 1 pooled it
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

153 citing papers in PubMed, 1 synthesis or guideline pooled it, 224 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. eIF5A and polyamines restrict mRNA levels in response to ribosome stalls.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Substrate Binding Relieves Autoinhibition of the Mammalian GCN2 Kinase.bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. A Novel Potent and Selective GCN2 Inhibitor, APL-4098, Has Antileukemic Activity through Dysregulation of Mitochondrial Function.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  13. The regulation, function and disease relevance of cytoplasmic tRNAs.Nature reviews. Molecular cell biology · 2026
    Review
  14. Article
  15. Quality control and signaling pathways at stalled ribosomes.Experimental & molecular medicine · 2026
    Review
  16. Article
  17. The ribosomal landscape in influenza A virus infection: from molecular mechanisms to clinical relevance.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
  18. Review
  19. Review
  20. Article

93 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ryuta IshimuraHoward Hughes Medical Institute, The Jackson Laboratory for Mammalian Genetics, Bar Harbor, United States.
Gabor NagyHoward Hughes Medical Institute, The Jackson Laboratory for Mammalian Genetics, Bar Harbor, United States.
Ivan DotuResearch Programme on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Barcelona, Spain.
Jeffrey H ChuangThe Jackson Laboratory for Genomic Medicine, Farmington, United States.
Susan L AckermanHoward Hughes Medical Institute, The Jackson Laboratory for Mammalian Genetics, Bar Harbor, United States.ORCID 0000-0002-6740-593X
Howard Hughes Medical Institute · USJackson Laboratory · USUniversitat Pompeu Fabra · ES

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
Ribosome Dysfunction in Neurological DisordersR01NS094637 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ACKERMAN, SUSAN L · 2015 to 2019
$1.6M
Combinatorial RNA Structural Features That Control RNA-Protein BindingR21HG007554 · NHGRI · JACKSON LABORATORY · PI CHUANG, JEFFREY HSU-MIN · 2014 to 2015
$513k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA034196NHGRI NIH HHS R21 HG007554NINDS NIH HHS R01 NS094637
6 · The paper itself

Abstract

Ribosome stalling during translation has recently been shown to cause neurodegeneration, yet the signaling pathways triggered by stalled elongation complexes are unknown. To investigate these pathways we analyzed the brain of C57BL/6J-Gtpbp2(nmf205)(-/-) mice in which neuronal elongation complexes are stalled at AGA codons due to deficiencies in a tRNA(Arg)UCU tRNA and GTPBP2, a mammalian ribosome rescue factor. Increased levels of phosphorylation of eIF2α (Ser51) were detected prior to neurodegeneration in these mice and transcriptome analysis demonstrated activation of ATF4, a key transcription factor in the integrated stress response (ISR) pathway. Genetic experiments showed that this pathway was activated by the eIF2α kinase, GCN2, in an apparent deacylated tRNA-independent fashion. Further we found that the ISR attenuates neurodegeneration in C57BL/6J-Gtpbp2(nmf205)(-/-) mice, underscoring the importance of cellular and stress context on the outcome of activation of this pathway. These results demonstrate the critical interplay between translation elongation and initiation in regulating neuron survival during cellular stress.

Indexed as

Peptide Chain Elongation, TranslationalPeptide Chain Initiation, TranslationalActivating Transcription Factor 4AnimalsEukaryotic Initiation Factor-2Gene Expression ProfilingGTP-Binding ProteinsMice, Inbred C57BLNeuronsPhosphorylationProtein Processing, Post-TranslationalProtein Serine-Threonine KinasesRibosomesRNA, Transfer, ArgActivating Transcription Factor 4Atf4 protein, mouseEif2ak4 protein, mouseEukaryotic Initiation Factor-2GTP-Binding ProteinsGTPBP2 protein, mouseProtein Serine-Threonine KinasesRNA, Transfer, Argchromosomesgenesmouseneurodegenerationneurosciencetranslation elongationtranslation initiation

Identifiers

PMID27085088
PMCPMC4917338
OpenAlexW2341404981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.