Evidence map›Paper›PMID 27084932›Full record

ArticleNucleic acids research2016

The structure of ends determines the pathway choice and Mre11 nuclease dependency of DNA double-strand break repair.

Shuren Liao, Margaret Tammaro, Hong Yan

Abstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. CtIP promotes the motor activity of DNA2 to accelerate long-range DNA end resection.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
  13. Article
  14. Review
  15. Purification and Biophysical Characterization of the Mre11-Rad50-Nbs1 Complex.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  16. Review
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Shuren LiaoFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Margaret TammaroFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA.
Hong YanFox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA 19111, USA Hong.Yan@fccc.edu.

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Werner Syndrome Protein, DNA End Processing, and Double-Strand Break RepairR01GM057962 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI YAN, HONG · 1998 to 2015
$4.5M
NCI NIH HHS P30 CA006927NIGMS NIH HHS R01 GM057962
6 · The paper itself

Abstract

The key event in the choice of repair pathways for DNA double-strand breaks (DSBs) is the initial processing of ends. Non-homologous end joining (NHEJ) involves limited processing, but homology-dependent repair (HDR) requires extensive resection of the 5' strand. How cells decide if an end is channeled to resection or NHEJ is not well understood. We hypothesize that the structure of ends is a major determinant and tested this hypothesis with model DNA substrates in Xenopus egg extracts. While ends with normal nucleotides are efficiently channeled to NHEJ, ends with damaged nucleotides or bulky adducts are channeled to resection. Resection is dependent on Mre11, but its nuclease activity is critical only for ends with 5' bulky adducts. CtIP is absolutely required for activating the nuclease-dependent mechanism of Mre11 but not the nuclease-independent mechanism. Together, these findings suggest that the structure of ends is a major determinant for the pathway choice of DSB repair and the Mre11 nuclease dependency of resection.

Indexed as

AnimalsCell ExtractsDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA End-Joining RepairHumansMRE11 Homologue ProteinNucleic Acid ConformationNucleotidesRecombinational DNA RepairXenopusXenopus ProteinsCell ExtractsDNA-Binding ProteinsMRE11 Homologue ProteinMre11 protein, XenopusNucleotidesXenopus Proteins

Identifiers

PMID27084932
PMCPMC4937313

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.