ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2016
Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- NAC transcription factor GbNTL9 modifies the accumulation and organization of cellulose microfibrils to enhance cotton fiber strength.Journal of advanced research · 2025Article
- Genetic dissection of cotton fiber quality and yield components using an interspecific introgression population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Duplicated Genes on Homologous Chromosomes Decipher the Dominant Epistasis of the Fiberless Mutant in Cotton.Biology · 2025Article
- Fine-mapping of a major QTL controlling plant height by BSA-seq and transcriptome sequencing in cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- An aldehyde dehydrogenase gene,Frontiers in plant science · 2024Article
- Re enhances anthocyanin and proanthocyanidin accumulation to produce red foliated cotton and brown fiber.Plant physiology · 2022Article
- Genome-wide association mapping for agronomic traits in an 8-way Upland cotton MAGIC population by SLAF-seq.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Quantitative Trait Locus Analysis and Identification of Candidate Genes for Micronaire in an Interspecific Backcross Inbred Line Population ofFrontiers in plant science · 2021Article
- Improved reconstruction and comparative analysis of chromosome 12 to rectify Mis-assemblies in Gossypium arboreum.BMC genomics · 2020Article
- Relationship between meiotic behaviour and fertility in backcross-1 derivatives of the [(Comparative cytogenetics · 2020Article
- QTL analysis and candidate gene identification for plant height in cotton based on an interspecific backcross inbred line population of Gossypium hirsutum × Gossypium barbadense.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Resequencing core accessions of a pedigree identifies derivation of genomic segments and key agronomic trait loci during cotton improvement.Plant biotechnology journal · 2019Article
- Knockdown ofFrontiers in plant science · 2019Article
- SSR-based association mapping of fiber quality in upland cotton using an eight-way MAGIC population.Molecular genetics and genomics : MGG · 2018Article
- Recent insights into cotton functional genomics: progress and future perspectives.Plant biotechnology journal · 2018Review
- Linkage and association mapping reveals the genetic basis of brown fibre (Gossypium hirsutum).Plant biotechnology journal · 2018Article
- QTL Mapping for Fiber Quality and Yield Traits Based on Introgression Lines Derived from Gossypium hirsutum × G. tomentosum.International journal of molecular sciences · 2018Article
- Article
- Asymmetric Evolution and Expansion of the NAC Transcription Factor in Polyploidized Cotton.Frontiers in plant science · 2018Article
- Genetic Map Construction and Fiber Quality QTL Mapping Using the CottonSNP80K Array in Upland Cotton.Frontiers in plant science · 2018Article
Corrections and comments
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5 authors.
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Abstract
A high-density linkage map was constructed using 1,885 newly obtained loci and 3,747 previously published loci, which included 5,152 loci with 4696.03 cM in total length and 0.91 cM in mean distance. Homology analysis in the cotton genome further confirmed the 13 expected homologous chromosome pairs and revealed an obvious inversion on Chr10 or Chr20 and repeated inversions on Chr07 or Chr16. In addition, two reciprocal translocations between Chr02 and Chr03 and between Chr04 and Chr05 were confirmed. Comparative genomics between the tetraploid cotton and the diploid cottons showed that no major structural changes exist between DT and D chromosomes but rather between AT and A chromosomes. Blast analysis between the tetraploid cotton genome and the mixed genome of two diploid cottons showed that most AD chromosomes, regardless of whether it is from the AT or DT genome, preferentially matched with the corresponding homologous chromosome in the diploid A genome, and then the corresponding homologous chromosome in the diploid D genome, indicating that the diploid D genome underwent converted evolution by the diploid A genome to form the DT genome during polyploidization. In addition, the results reflected that a series of chromosomal translocations occurred among Chr01/Chr15, Chr02/Chr14, Chr03/Chr17, Chr04/Chr22, and Chr05/Chr19.
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