Evidence map›Paper›PMID 27079612›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2016

Insights into the pathogenesis of ulcerative colitis from a murine model of stasis-induced dysbiosis, colonic metaplasia, and genetic susceptibility.

Marc A Ward, Joseph F Pierre, Raquel F Leal, Yong Huang, Benjamin Shogan, Sushila R Dalal, Christopher R Weber, Vanessa A Leone, Mark W Musch, Gary C An and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Pouchitis: pathophysiology and management.Nature reviews. Gastroenterology & hepatology · 2024
    Review
  4. Article
  5. Pouchitis: insight into the pathogenesis and clinical aspects.American journal of translational research · 2022
    Review
  6. Review
  7. The evidence for fungus in Crohn's disease pathogenesis.Clinical journal of gastroenterology · 2018
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Gastrointestinal immune and microbiome changes during parenteral nutrition.American journal of physiology. Gastrointestinal and liver physiology · 2017
    Review
  13. The Immunological Basis of Inflammatory Bowel Disease.Gastroenterology research and practice · 2016
    Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Marc A WardDepartment of Surgery, University of Chicago, Chicago, Illinois;
Joseph F PierreDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois;
Raquel F LealColorectal Surgery Unit, Department of Surgery, University of Campinas, Campinas, Sao Paulo, Brazil;
Yong HuangDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois;
Benjamin ShoganDepartment of Surgery, University of Chicago, Chicago, Illinois;
Sushila R DalalDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois;
Christopher R WeberDepartment of Pathology, University of Chicago, Chicago, Illinois;
Vanessa A LeoneDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois;
Mark W MuschDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois;
Gary C AnDepartment of Surgery, University of Chicago, Chicago, Illinois;
Mrinalini C RaoDepartment of Physiology and Biophysics, University of Illinois at Chicago, Chicago, Illinois;
David T RubinDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois;
Laura E RaffalsDepartment of Medicine, Mayo Clinic, Rochester, Minnesota;
Dionysios A AntonopoulosDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois; Biosciences Division, Argonne National Laboratory, Argonne, Illinois; and Institute for Genomics and Systems Biology, University of Chicago, Chicago, Illinois.
Mitch L SoginJosephine Bay Paul Center, Biosciences Division, Marine Biological Laboratory at Woods Hole, Woods Hole, Massachusetts;
Neil H HymanDepartment of Surgery, University of Chicago, Chicago, Illinois;
John C AlverdyDepartment of Surgery, University of Chicago, Chicago, Illinois;
Eugene B ChangDepartment of Medicine, Knapp Center for Biomedical Discovery, University of Chicago, Chicago, Illinois; echang@medicine.bsd.uchicago.edu.
University of Chicago · USArgonne National Laboratory · USMarine Biological Laboratory · USMayo Clinic · USUniversidade Estadual de Campinas (UNICAMP) · BRUniversity of Illinois Chicago · US

Funding

ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1990 to 2025
$29.8M
Research Training in Digestive Health, Diseases, and NutritionT32DK007074 · NIDDK · UNIVERSITY OF CHICAGO · PI EUGENE B CHANG · 1986 to 2026
$11.3M
The Role of the Gut Microbiota in Ulcerative ColitisUH3DK083993 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CHANG, EUGENE B, MEYER, FOLKER · 2010 to 2012
$8.2M
Mutualistic relationship between Hsp25/27 and gut microbes as a major and essential determinant of mucosal healing and microbial fitness following intestinal injuryR01DK047722 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1993 to 2020
$4.3M
Cytoprotective Role of Heat Shock Proteins in IBDR37DK047722 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 2008 to 2017
$3.8M
Novel role and function of Paneth cell PYY in anti-fungal innate immunityF32DK105728 · NIDDK · UNIVERSITY OF CHICAGO · PI PIERRE, JOSEPH F · 2015 to 2015
$54k
NIDDK NIH HHS F32 DK105728NIDDK NIH HHS P30 DK042086NIDDK NIH HHS R01 DK047722NIDDK NIH HHS R37 DK047722NIDDK NIH HHS T32 DK007074NIDDK NIH HHS UH3 DK083993
6 · The paper itself

Abstract

Gut dysbiosis, host genetics, and environmental triggers are implicated as causative factors in inflammatory bowel disease (IBD), yet mechanistic insights are lacking. Longitudinal analysis of ulcerative colitis (UC) patients following total colectomy with ileal anal anastomosis (IPAA) where >50% develop pouchitis offers a unique setting to examine cause vs. effect. To recapitulate human IPAA, we employed a mouse model of surgically created blind self-filling (SFL) and self-emptying (SEL) ileal loops using wild-type (WT), IL-10 knockout (KO) (IL-10), TLR4 KO (T4), and IL-10/T4 double KO mice. After 5 wk, loop histology, host gene/protein expression, and bacterial 16s rRNA profiles were examined. SFL exhibit fecal stasis due to directional motility oriented toward the loop end, whereas SEL remain empty. In WT mice, SFL, but not SEL, develop pouchlike microbial communities without accompanying active inflammation. However, in genetically susceptible IL-10-deficient mice, SFL, but not SEL, exhibit severe inflammation and mucosal transcriptomes resembling human pouchitis. The inflammation associated with IL-10 required TLR4, as animals lacking both pathways displayed little disease. Furthermore, germ-free IL-10 mice conventionalized with SFL, but not SEL, microbiota populations develop severe colitis. These data support essential roles of stasis-induced, colon-like microbiota, TLR4-mediated colonic metaplasia, and genetic susceptibility in the development of pouchitis and possibly UC. However, these factors by themselves are not sufficient. Similarities between this model and human UC/pouchitis provide opportunities for gaining insights into the mechanistic basis of IBD and for identification of targets for novel preventative and therapeutic interventions.

Indexed as

Gastrointestinal MotilityAnimalsColitis, UlcerativeDysbiosisFemaleHumansInterleukin-10Intestinal MucosaIntestinesMiceMice, Inbred C57BLMicrobiotaToll-Like Receptor 4IL10 protein, mouseInterleukin-10Tlr4 protein, mouseToll-Like Receptor 4dysbiosisinflammatory bowel diseasepouchitisulcerative colitis

Identifiers

PMID27079612
PMCPMC4935476
OpenAlexW2336671846

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.