Evidence map›Paper›PMID 27078850›Full record

ArticleOncotarget2016

Whole exome sequencing of urachal adenocarcinoma reveals recurrent NF1 mutations.

Harshabad Singh, Yang Liu, Xiuli Xiao, Ling Lin, Jaegil Kim, Paul Van Hummelen, Chin-Lee Wu, Adam J Bass, Philip J Saylor

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 2 pooled it
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 2 syntheses or guidelines pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Prevalence of APC and PTEN Alterations in Urachal Cancer.Pathology oncology research : POR · 2020
    Article
  6. Comparative genomic profiling of glandular bladder tumours.Virchows Archiv : an international journal of pathology · 2020
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Harshabad SinghMassachusetts General Hospital Cancer Center, Boston, MA, USA.
Yang LiuDana Farber Cancer Institute, Boston, MA, USA.
Xiuli XiaoDepartment of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Ling LinDana Farber Cancer Institute, Boston, MA, USA.
Jaegil KimBroad Institute, Cambridge, MA, USA.
Paul Van HummelenDana Farber Cancer Institute, Boston, MA, USA.
Chin-Lee WuDepartment of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Adam J BassDana Farber Cancer Institute, Boston, MA, USA.
Philip J SaylorMassachusetts General Hospital Cancer Center, Boston, MA, USA.
Dana-Farber Cancer Institute · USMassachusetts General Hospital · USBroad Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Urachal adenocarcinoma is a rare bladder malignancy arising from the urachal remnant. Given its rarity and the lack of knowledge about its genetic characteristics, optimal management of this cancer is not well defined. Practice patterns vary and outcomes remain poor. In order to identify the genomic underpinnings of this malignancy, we performed whole exome sequencing using seven tumor/normal pairs of formalin fixed archival specimens. We identified recurrent evidence of MAP-kinase pathway activation as three patients had neurofibromin 1 (NF1) mutations, with one of these patients also harboring an oncogenic KRAS G13D mutation. We also observed recurrent evidence of Wnt/β-catenin pathway activation as three patients had oncogenic mutations in APC or RNF43. In addition, somatic copy number analysis revealed focal chromosome 12p amplifications in three samples, resembling findings from testicular germ cell tumors. We describe the genomic landscape of this malignancy in our institutional cohort and propose investigation of the therapeutic potential for MAP-K pathway inhibition in the subset of patients who show evidence of its activation.

Indexed as

AdenocarcinomaAged, 80 and overExome SequencingFemaleGenes, Neurofibromatosis 1HumansMaleMiddle AgedMutationNeurofibromin 1Urinary Bladder NeoplasmsYoung AdultNeurofibromin 1NF1urachal adenocarcinomawhole exome sequencing

Identifiers

PMID27078850
PMCPMC5045390
OpenAlexW2322177407

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.