Evidence map›Paper›PMID 27078234›Full record

ArticleBiochemistry2016

The ssrA-Tag Facilitated Degradation of an Integral Membrane Protein.

Qian Chai, Zhaoshuai Wang, Stacy R Webb, Rebecca E Dutch, Yinan Wei

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 22 citations in OpenAlex.

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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Qian ChaiDepartment of Chemistry and ‡Department of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, Kentucky 40506, United States.
Zhaoshuai WangDepartment of Chemistry and ‡Department of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, Kentucky 40506, United States.
Stacy R WebbDepartment of Chemistry and ‡Department of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, Kentucky 40506, United States.
Rebecca E DutchDepartment of Chemistry and ‡Department of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, Kentucky 40506, United States.
Yinan WeiDepartment of Chemistry and ‡Department of Molecular and Cellular Biochemistry, University of Kentucky , Lexington, Kentucky 40506, United States.
University of Kentucky · US

Funding

SV5 and Hendra virus F protein promoted membrane fusionR01AI051517 · NIAID · UNIVERSITY OF KENTUCKY · PI DUTCH, REBECCA E. · 2002 to 2019
$4.4M
Targeting functional assembly of the bacterial multidrug efflux transporterR21AI103717 · NIAID · UNIVERSITY OF KENTUCKY · PI WEI, YINAN · 2013 to 2014
$389k
Fusion protein TM-TM interactions: Modulation of pre-fusion protein stabilityF31AI120653 · NIAID · UNIVERSITY OF KENTUCKY · PI WEBB, STACY RENEE · 2015 to 2016
$69k
FASEB SRC on Virus Structure and AssemblyR13AI100441 · NIAID · FEDERATION OF AMER SOC FOR EXPER BIOLOGY · PI DUTCH, REBECCA E., RAO, VENIGALLA B. · 2012 to 2012
$6k
PARAMYXOVIRUS FUSION PROTEIN FUNCTIONSF32AI009607 · NIAID · NORTHWESTERN UNIVERSITY · PI DUTCH, REBECCA E. · 1996 to 1999
–
NIAID NIH HHS F31 AI120653NIAID NIH HHS F32 AI009607NIAID NIH HHS R01 AI051517NIAID NIH HHS R13 AI100441NIAID NIH HHS R21 AI103717
6 · The paper itself

Abstract

ATP-dependent degradation plays a critical role in the quality control and recycling of proteins in cells. However, complete degradation of membrane proteins by ATP-dependent proteases in bacteria is not well-studied. We discovered that the degradation of a multidomain and multispan integral membrane protein AcrB could be facilitated by the introduction of a ssrA-tag at the C-terminus of the protein sequence and demonstrated that the cytoplasmic unfoldase-protease complex ClpXP was involved in the degradation. This is the first report to our knowledge to reveal that the ClpXP complex is capable of degrading integral membrane proteins. The chaperone SspB also played a role in the degradation. Using purified proteins, we demonstrated that the addition of the ssrA-tag did not drastically affect the structure of AcrB, and the degradation of detergent solubilized AcrB by purified ClpXP could be observed in vitro.

Indexed as

Amino Acid SequenceATP-Binding Cassette, Sub-Family C ProteinsEndopeptidase ClpEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsHumansModels, MolecularProtein ConformationProteolysisAcrB protein, E coliATP-Binding Cassette, Sub-Family C ProteinsClpXP protease, E coliEndopeptidase ClpEscherichia coli Proteins

Identifiers

PMID27078234
PMCPMC5695868
OpenAlexW2336845605

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.