Evidence map›Paper›PMID 27078102›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

A distant trophoblast-specific enhancer controls HLA-G expression at the maternal-fetal interface.

Leonardo M R Ferreira, Torsten B Meissner, Tarjei S Mikkelsen, William Mallard, Charles W O'Donnell, Tamara Tilburgs, Hannah A B Gomes, Raymond Camahort, Richard I Sherwood, David K Gifford and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 93 citations in OpenAlex.

  1. Review
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  6. BHLHE40 Cooperates with GATA2/3 to Control Human Syncytiotrophoblast Lineage Differentiation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  7. Review
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  9. Article
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  11. Review
  12. HLA-C expression in extravillous trophoblasts is determined by an ELF3-NLRP2/NLRP7 regulatory axis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  14. Review
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Leonardo M R FerreiraDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138; leonardoferreira@fas.harvard.edu jlstrom@fas.harvard.edu.
Torsten B MeissnerDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138;
Tarjei S MikkelsenDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138; The Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142; Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138;
William MallardDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138; The Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142;
Charles W O'DonnellHarvard Stem Cell Institute, Harvard University, Cambridge, MA 02138;
Tamara TilburgsDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138;
Hannah A B GomesDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138;
Raymond CamahortDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138;
Richard I SherwoodDivision of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115;
David K GiffordComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139;
John L RinnDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138; Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138; The Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142; Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138; Department of Pathology, Beth Israel Deaconess Medical Center, Boston, MA 02156.
Chad A CowanDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138; The Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142; Harvard Stem Cell Institute, Harvard University, Cambridge, MA 02138;
Jack L StromingerDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138; leonardoferreira@fas.harvard.edu jlstrom@fas.harvard.edu.
Harvard University · USBroad Institute · USHarvard Stem Cell Institute · USMassachusetts Institute of Technology · US

Funding

Training in Molecular, Cellular, and Chemical BiologyT32GM007598 · NIGMS · HARVARD UNIVERSITY · PI DULAC, CATHERINE · 1985 to 2019
$16.2M
Isogenic Human Pluripotent Stem Cell-Based Models of Human Disease MutationsR01DK097768 · NIDDK · BROAD INSTITUTE, INC. · PI COWAN, CHAD ALBERT, ZHANG, FENG · 2012 to 2016
$11.0M
Human Pluripotent Stem Cell and Progenitor Models of Cardiac and Blood DiseasesU01HL100408 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI COWAN, CHAD ALBERT, MELTON, DOUGLAS A · 2009 to 2015
$8.9M
Fine-mapping and Characterization of Metabolic Loci in the DPP Outcomes StudyR01DK072041 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI FLOREZ, JOSE CARLOS · 2005 to 2017
$7.6M
Human Decidual Lymphocytes and their Placental LigandsR01AI053330 · NIAID · HARVARD UNIVERSITY · PI STROMINGER, JACK L · 2003 to 2014
$4.1M
High-throughput methods for elucidating the control of chromatin accessibilityR01HG008363 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GIFFORD, DAVID K · 2015 to 2017
$2.3M
Tag-Seq: A Flexible Framework for Highly Multiplexed Reporter AssaysR01HG006785 · NHGRI · BROAD INSTITUTE, INC. · PI MIKKELSEN, TARJEI SIGURD · 2012 to 2014
$1.1M
Predictive transcription factor modeling to program endodermal cell fatesK01DK101684 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI SHERWOOD, RICHARD I · 2014 to 2018
$670k
Human Decidual Leukocytes and Their Placental LigandsR56AI053330 · NIAID · HARVARD UNIVERSITY · PI STROMINGER, JACK L · 2009 to 2009
$415k
NHGRI NIH HHS R01 HG006785NHGRI NIH HHS R01 HG008363NHLBI NIH HHS U01 HL100408NIAID NIH HHS R01 AI053330NIAID NIH HHS R56 AI053330NIDDK NIH HHS K01 DK101684NIDDK NIH HHS R01 DK072041NIDDK NIH HHS R01 DK097768NIGMS NIH HHS T32 GM007598
6 · The paper itself

Abstract

HLA-G, a nonclassical HLA molecule uniquely expressed in the placenta, is a central component of fetus-induced immune tolerance during pregnancy. The tissue-specific expression of HLA-G, however, remains poorly understood. Here, systematic interrogation of the HLA-G locus using massively parallel reporter assay (MPRA) uncovered a previously unidentified cis-regulatory element 12 kb upstream of HLA-G with enhancer activity, Enhancer L Strikingly, clustered regularly-interspaced short palindromic repeats (CRISPR)/Cas9-mediated deletion of this enhancer resulted in ablation of HLA-G expression in JEG3 cells and in primary human trophoblasts isolated from placenta. RNA-seq analysis demonstrated that Enhancer L specifically controls HLA-G expression. Moreover, DNase-seq and chromatin conformation capture (3C) defined Enhancer L as a cell type-specific enhancer that loops into the HLA-G promoter. Interestingly, MPRA-based saturation mutagenesis of Enhancer L identified motifs for transcription factors of the CEBP and GATA families essential for placentation. These factors associate with Enhancer L and regulate HLA-G expression. Our findings identify long-range chromatin looping mediated by core trophoblast transcription factors as the mechanism controlling tissue-specific HLA-G expression at the maternal-fetal interface. More broadly, these results establish the combination of MPRA and CRISPR/Cas9 deletion as a powerful strategy to investigate human immune gene regulation.

Indexed as

Enhancer Elements, GeneticFemaleGene Expression Regulation, DevelopmentalHistocompatibility, Maternal-FetalHLA-G AntigensHumansImmunogenetic PhenomenaMaternal-Fetal ExchangePlacentaPregnancyTrophoblastsHLA-G AntigensCRISPR/Cas9human immune gene regulationimmune toleranceMPRApregnancy

Identifiers

PMID27078102
PMCPMC4868469
OpenAlexW2340310656

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.