Evidence map›Paper›PMID 27077738›Full record

ArticlePloS one2016

Transcript Analysis and Regulative Events during Flower Development in Olive (Olea europaea L.).

Fiammetta Alagna, Marco Cirilli, Giulio Galla, Fabrizio Carbone, Loretta Daddiego, Paolo Facella, Loredana Lopez, Chiara Colao, Roberto Mariotti, Nicolò Cultrera and 5 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Genetics of Plant Metabolism.International journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Biology · 2022
    Article
  9. Article
  10. Article
  11. Microsatellite Markers in Olives (Foods (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Somatic Embryogenesis from Mature Embryos ofPlants (Basel, Switzerland) · 2020
    Article
  14. Association Study of the 5'UTR Intron of theFrontiers in plant science · 2020
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Fiammetta AlagnaInstitute of Biosciences and Bioresources, National Research Council, Perugia, Italy.
Marco CirilliLaboratory of Molecular Ecophysiology and Biotechnology of Woody Plants, Department of Agricultural and Forestry Science, University of Tuscia, Viterbo, Italy.
Giulio GallaLaboratory of Plant Genetics and Genomics, DAFNAE, University of Padova, Legnaro (PD), Italy.
Fabrizio CarboneItalian National Agency for New Technologies, Energy and Sustainable Economic Development, TRISAIA Research Center, Rotondella (MT), Italy.
Loretta DaddiegoItalian National Agency for New Technologies, Energy and Sustainable Economic Development, TRISAIA Research Center, Rotondella (MT), Italy.
Paolo FacellaItalian National Agency for New Technologies, Energy and Sustainable Economic Development, TRISAIA Research Center, Rotondella (MT), Italy.
Loredana LopezItalian National Agency for New Technologies, Energy and Sustainable Economic Development, TRISAIA Research Center, Rotondella (MT), Italy.
Chiara ColaoLaboratory of Molecular Ecophysiology and Biotechnology of Woody Plants, Department of Agricultural and Forestry Science, University of Tuscia, Viterbo, Italy.
Roberto MariottiInstitute of Biosciences and Bioresources, National Research Council, Perugia, Italy.
Nicolò CultreraInstitute of Biosciences and Bioresources, National Research Council, Perugia, Italy.
Martina RossiInstitute of Biosciences and Bioresources, National Research Council, Perugia, Italy.
Gianni BarcacciaLaboratory of Plant Genetics and Genomics, DAFNAE, University of Padova, Legnaro (PD), Italy.
Luciana BaldoniInstitute of Biosciences and Bioresources, National Research Council, Perugia, Italy.
Rosario MuleoLaboratory of Molecular Ecophysiology and Biotechnology of Woody Plants, Department of Agricultural and Forestry Science, University of Tuscia, Viterbo, Italy.
Gaetano PerrottaItalian National Agency for New Technologies, Energy and Sustainable Economic Development, TRISAIA Research Center, Rotondella (MT), Italy.
National Agency for New Technologies, Energy and Sustainable Economic Development · ITNational Research Council · ITUniversità degli Studi della Tuscia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification and characterization of transcripts involved in flower organ development, plant reproduction and metabolism represent key steps in plant phenotypic and physiological pathways, and may generate high-quality transcript variants useful for the development of functional markers. This study was aimed at obtaining an extensive characterization of the olive flower transcripts, by providing sound information on the candidate MADS-box genes related to the ABC model of flower development and on the putative genetic and molecular determinants of ovary abortion and pollen-pistil interaction. The overall sequence data, obtained by pyrosequencing of four cDNA libraries from flowers at different developmental stages of three olive varieties with distinct reproductive features (Leccino, Frantoio and Dolce Agogia), included approximately 465,000 ESTs, which gave rise to more than 14,600 contigs and approximately 92,000 singletons. As many as 56,700 unigenes were successfully annotated and provided gene ontology insights into the structural organization and putative molecular function of sequenced transcripts and deduced proteins in the context of their corresponding biological processes. Differentially expressed genes with potential regulatory roles in biosynthetic pathways and metabolic networks during flower development were identified. The gene expression studies allowed us to select the candidate genes that play well-known molecular functions in a number of biosynthetic pathways and specific biological processes that affect olive reproduction. A sound understanding of gene functions and regulatory networks that characterize the olive flower is provided.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantFlowersFruitMolecular Sequence AnnotationOleaPollenPollinationRNA, MessengerSex DifferentiationRNA, Messenger

Identifiers

PMID27077738
PMCPMC4831748
OpenAlexW2336973073

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.