Evidence map›Paper›PMID 27076228›Full record

ArticleJournal of clinical immunology2016

Dominant Splice Site Mutations in PIK3R1 Cause Hyper IgM Syndrome, Lymphadenopathy and Short Stature.

Slavé Petrovski, Roberta E Parrott, Joseph L Roberts, Hongxiang Huang, Jialong Yang, Balachandra Gorentla, Talal Mousallem, Endi Wang, Martin Armstrong, Duncan McHale and 4 more

Open access · greenAbstract readCase Reports
In one paragraph

Article in Journal of clinical immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 4 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 4 syntheses or guidelines pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Systematic review of mortality and survival rates for APDS.Clinical and experimental medicine · 2024
    Pooled it
  3. Guideline
  4. Pooled it
  5. Review
  6. Hyperimmunoglobulin syndromes: A review of HIGM, HIES, and HIDS.Journal of translational autoimmunity · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Alternative RNA splicing defects in pediatric cancers: new insights in tumorigenesis and potential therapeutic vulnerabilities.Annals of oncology : official journal of the European Society for Medical Oncology · 2022
    Review
  17. PI3K Isoforms in B Cells.Current topics in microbiology and immunology · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Slavé PetrovskiInstitute for Genomic Medicine, Columbia University, New York, NY, 10032, USA.
Roberta E ParrottDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA.
Joseph L RobertsDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA.
Hongxiang HuangDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA.
Jialong YangDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA.
Balachandra GorentlaDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA.
Talal MousallemDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA.
Endi WangDepartment of Pathology, Duke University Medical Center, Durham, NC, 27710, USA.
Martin ArmstrongUCB NewMedicines, Slough, UK.
Duncan McHaleUCB NewMedicines, Slough, UK.
Nancie J MacIverDepartment of Pediatrics, Division of Endocrinology, Duke University Medical Center, Durham, NC, 27710, USA.
David B GoldsteinInstitute for Genomic Medicine, Columbia University, New York, NY, 10032, USA.
Xiao-Ping ZhongDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA.
Rebecca H BuckleyDepartment of Pediatrics, Division of Allergy and Immunology, Duke University Medical Center, 127 MSRB1, Box 2898, Durham, NC, 27710, USA. buckl003@mc.duke.edu.
Duke University Hospital · USColumbia University · USDuke University · USUCB Pharma (United Kingdom) · GBDuke Medical Center · US

Funding

The Epilepsy Phenome/ Genome Project (EPGP)U01NS053998 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LOWENSTEIN, DANIEL H · 2007 to 2013
$26.4M
3 of 7 Epi4K: Sequencing, Biostatistics & Bioinformatics CoreU01NS077303 · NINDS · DUKE UNIVERSITY · PI EICHLER, EVAN, GOLDSTEIN, DAVID B. · 2011 to 2018
$13.3M
NEUROPATHOLOGY COREP30AG028377 · NIA · DUKE UNIVERSITY · PI WELSH-BOHMER, KATHLEEN ANNE · 2006 to 2011
$9.6M
Whole-genome sequencing for rare highly penetrant gene variants in schizophreniaRC2MH089915 · NIMH · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B. · 2009 to 2011
$4.6M
Identifying de novo mutations causing OCD in trios by whole exome sequencingR01MH099216 · NIMH · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B., NESTADT, GERALD · 2013 to 2017
$4.3M
Regulation of peripheral T cell toleranceR01AI079088 · NIAID · DUKE UNIVERSITY · PI ZHONG, XIAOPING · 2008 to 2019
$3.5M
TSC1-mTOR signaling and T cell toleranceR01AI101206 · NIAID · DUKE UNIVERSITY · PI ZHONG, XIAOPING · 2012 to 2016
$1.9M
1 of 2: Identification of Rare Variants of OCDR01MH097971 · NIMH · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B. · 2013 to 2017
$1.9M
Genetics of Normal Human Variation: Implications for DiseaseK01MH098126 · NIMH · DUKE UNIVERSITY · PI CIRULLI ROGERS, ELIZABETH TRILBY · 2013 to 2016
$555k
NIAID NIH HHS R01 AI079088NIAID NIH HHS R01 AI101206NIA NIH HHS P30 AG028377NIMH NIH HHS K01 MH098126NIMH NIH HHS R01 MH097971NIMH NIH HHS R01 MH099216NIMH NIH HHS RC2 MH089915NINDS NIH HHS U01 NS053998NINDS NIH HHS U01 NS077303
6 · The paper itself

Abstract

The purpose of this research was to use next generation sequencing to identify mutations in patients with primary immunodeficiency diseases whose pathogenic gene mutations had not been identified. Remarkably, four unrelated patients were found by next generation sequencing to have the same heterozygous mutation in an essential donor splice site of PIK3R1 (NM_181523.2:c.1425 + 1G > A) found in three prior reports. All four had the Hyper IgM syndrome, lymphadenopathy and short stature, and one also had SHORT syndrome. They were investigated with in vitro immune studies, RT-PCR, and immunoblotting studies of the mutation's effect on mTOR pathway signaling. All patients had very low percentages of memory B cells and class-switched memory B cells and reduced numbers of naïve CD4+ and CD8+ T cells. RT-PCR confirmed the presence of both an abnormal 273 base-pair (bp) size and a normal 399 bp size band in the patient and only the normal band was present in the parents. Following anti-CD40 stimulation, patient's EBV-B cells displayed higher levels of S6 phosphorylation (mTOR complex 1 dependent event), Akt phosphorylation at serine 473 (mTOR complex 2 dependent event), and Akt phosphorylation at threonine 308 (PI3K/PDK1 dependent event) than controls, suggesting elevated mTOR signaling downstream of CD40. These observations suggest that amino acids 435-474 in PIK3R1 are important for its stability and also its ability to restrain PI3K activity. Deletion of Exon 11 leads to constitutive activation of PI3K signaling. This is the first report of this mutation and immunologic abnormalities in SHORT syndrome.

Indexed as

Alternative SplicingB-LymphocytesCell Line, TransformedChildChild, PreschoolClass Ia Phosphatidylinositol 3-KinaseCraniofacial AbnormalitiesDNA Mutational AnalysisDwarfismEarFemaleGenes, DominantGrowth DisordersHigh-Throughput Nucleotide SequencingHumansHypercalcemiaClass Ia Phosphatidylinositol 3-KinaseMTOR protein, humanPhosphatidylinositol 3-KinasesPIK3R1 protein, humanRibosomal Protein S6 KinasesTOR Serine-Threonine KinasesHyper IgM syndromelymphadenopathymTOR pathwaynext generation sequencingPIK3R1 splice site mutationsshort statureSHORT syndrome

Identifiers

PMID27076228
PMCPMC5690581
OpenAlexW2335928216

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.