Evidence map›Paper›PMID 27075727›Full record

ArticleGenetics2016

Cross-Talk Between Sporophyte and Gametophyte Generations Is Promoted by CHD3 Chromatin Remodelers in Arabidopsis thaliana.

Benjamin Carter, James T Henderson, Elisabeth Svedin, Martijn Fiers, Kyle McCarthy, Amanda Smith, Changhua Guo, Brett Bishop, Heng Zhang, Tjitske Riksen and 4 more

Abstract read
In one paragraph

Article in Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. ArabidopsisPlant physiology · 2018
    Article
  9. Review
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Benjamin CarterDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
James T HendersonDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Elisabeth SvedinDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907.
Martijn FiersBioscience, Wageningen University and Research Center, 6708 PB Wageningen, The Netherlands.
Kyle McCarthyDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Amanda SmithDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Changhua GuoBioscience, Wageningen University and Research Center, 6708 PB Wageningen, The Netherlands.
Brett BishopDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Heng ZhangDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Tjitske RiksenBioscience, Wageningen University and Research Center, 6708 PB Wageningen, The Netherlands.
Allison ShockleyDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907.
Brian P DilkesDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907.
Kim BoutilierBioscience, Wageningen University and Research Center, 6708 PB Wageningen, The Netherlands.
Joe OgasDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907 ogas@purdue.edu.

Funding

ANALYSIS OF ROLE OF CHD PROTEINS IN ARABIDOPSIS THALIANAR01GM059770 · NIGMS · PURDUE UNIVERSITY WEST LAFAYETTE · PI OGAS, JOSEPH P · 2000 to 2004
$1.3M
NIGMS NIH HHS R01 GM059770
6 · The paper itself

Abstract

Angiosperm reproduction requires the integrated development of multiple tissues with different genotypes. To achieve successful fertilization, the haploid female gametophytes and diploid ovary must coordinate their development, after which the male gametes must navigate through the maternal sporophytic tissues to reach the female gametes. After fertilization, seed development requires coordinated development of the maternal diploid integuments, the triploid endosperm, and the diploid zygote. Transcription and signaling factors contribute to communication between these tissues, and roles for epigenetic regulation have been described for some of these processes. Here we identify a broad role for CHD3 chromatin remodelers in Arabidopsis thaliana reproductive development. Plants lacking the CHD3 remodeler, PICKLE, exhibit various reproductive defects including abnormal development of the integuments, female gametophyte, and pollen tube, as well as delayed progression of ovule and embryo development. Genetic analyses demonstrate that these phenotypes result from loss of PICKLE in the maternal sporophyte. The paralogous gene PICKLE RELATED 2 is preferentially expressed in the endosperm and acts antagonistically with respect to PICKLE in the seed: loss of PICKLE RELATED 2 suppresses the large seed phenotype of pickle seeds. Surprisingly, the alteration of seed size in pickle plants is sufficient to determine the expression of embryonic traits in the seedling primary root. These findings establish an important role for CHD3 remodelers in plant reproduction and highlight how the epigenetic status of one tissue can impact the development of genetically distinct tissues.

Indexed as

ArabidopsisArabidopsis ProteinsDNA HelicasesEndospermEpigenesis, GeneticGerm Cells, PlantArabidopsis ProteinsAT2G25170 protein, ArabidopsisDNA HelicasesovulePICKLEPKR2pollen tubeseed size

Identifiers

PMID27075727
PMCPMC4896196

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.