Evidence map›Paper›PMID 27074779›Full record

ArticleAnalytical and bioanalytical chemistry2016

Metabolomics reveals mycoplasma contamination interferes with the metabolism of PANC-1 cells.

Tao Yu, Yongtao Wang, Huizhen Zhang, Caroline H Johnson, Yiming Jiang, Xiangjun Li, Zeming Wu, Tian Liu, Kristopher W Krausz, Aiming Yu and 3 more

Open access · greenAbstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Tao YuSchool of Pharmaceutical Sciences, Sun Yat-sen University, 132# Waihuandong Rd, University City of Guangzhou, Guangzhou, 510006, China.
Yongtao WangSchool of Pharmaceutical Sciences, Sun Yat-sen University, 132# Waihuandong Rd, University City of Guangzhou, Guangzhou, 510006, China.
Huizhen ZhangSchool of Pharmaceutical Sciences, Sun Yat-sen University, 132# Waihuandong Rd, University City of Guangzhou, Guangzhou, 510006, China.
Caroline H JohnsonDepartment of Environmental Health Sciences, Yale School of Public Health, Yale University, 60 College Street, New Haven, CT, 06520, USA.
Yiming JiangSchool of Pharmaceutical Sciences, Sun Yat-sen University, 132# Waihuandong Rd, University City of Guangzhou, Guangzhou, 510006, China.
Xiangjun LiThermo Fisher Scientific, Xin Jinqiao Rd., Shanghai, 201206, China.
Zeming WuThermo Fisher Scientific, Xin Jinqiao Rd., Shanghai, 201206, China.
Tian LiuThermo Fisher Scientific, Xin Jinqiao Rd., Shanghai, 201206, China.
Kristopher W KrauszLaboratory of Metabolism, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, 20892, USA.
Aiming YuDepartment of Biochemistry and Molecular Medicine, UC Davis Medical Center, Sacramento, CA, 95817, USA.
Frank J GonzalezLaboratory of Metabolism, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, 20892, USA.
Min HuangSchool of Pharmaceutical Sciences, Sun Yat-sen University, 132# Waihuandong Rd, University City of Guangzhou, Guangzhou, 510006, China.
Huichang BiSchool of Pharmaceutical Sciences, Sun Yat-sen University, 132# Waihuandong Rd, University City of Guangzhou, Guangzhou, 510006, China. bihchang@mail.sysu.edu.cn.
Sun Yat-sen University · CNThermo Fisher Scientific (China) · CNCenter for Cancer Research · USNational Cancer Institute · USUniversity of California Davis Medical Center · USYale University · US

Funding

Xenobiotic receptorsZIABC005562 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GONZALEZ, FRANK J · 2009 to 2025
$26.9M
Xenobiotic ReceptorsZIABC005708 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GONZALEZ, FRANK J · 2009 to 2025
$16.4M
Xenobiotic-Metabolizing EnzymesZ01BC005562 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GONZALEZ, FRANK J · 1996 to 2008
$1.3M
Intramural NIH HHS Z01 BC005562
6 · The paper itself

Abstract

Mycoplasma contamination is a common problem in cell culture and can alter cellular functions. Since cell metabolism is either directly or indirectly involved in every aspect of cell function, it is important to detect changes to the cellular metabolome after mycoplasma infection. In this study, liquid chromatography mass spectrometry (LC/MS)-based metabolomics was used to investigate the effect of mycoplasma contamination on the cellular metabolism of human pancreatic carcinoma cells (PANC-1). Multivariate analysis demonstrated that mycoplasma contamination induced significant metabolic changes in PANC-1 cells. Twenty-three metabolites were identified and found to be involved in arginine and purine metabolism and energy supply. This study demonstrates that mycoplasma contamination significantly alters cellular metabolite levels, confirming the compelling need for routine checking of cell cultures for mycoplasma contamination, particularly when used for metabolomics studies. Graphical abstract Metabolomics reveals mycoplasma contamination changes the metabolome of PANC-1 cells.

Indexed as

ArginineCell Culture TechniquesCell Line, TumorChromatography, LiquidHumansMass SpectrometryMetabolomicsMycoplasmaPurinesArgininepurinePurinesCell cultureCellular metabolismMetabolomicsMycoplasma contaminationPANC-1 cells

Identifiers

PMID27074779
PMCPMC6300981
OpenAlexW2336747901

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.