Evidence map›Paper›PMID 27074249›Full record

ArticleProtein science : a publication of the Protein Society2016

X-ray radiation-induced addition of oxygen atoms to protein residues.

Jimin Wang

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Crystal structure of the C-terminal domain of DENR.Computational and structural biotechnology journal · 2020
    Article
  4. Article
  5. Article
  6. Comment on Wang's paper on the covalent Cys-X-Lys bridges.Protein science : a publication of the Protein Society · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Oxygen additions in serial femtosecond crystallographic protein structures.Protein science : a publication of the Protein Society · 2016
    Article
  13. Destruction-and-diffraction by X-ray free-electron laser.Protein science : a publication of the Protein Society · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Jimin WangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, 06520.

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
NIGMS NIH HHS P01 GM022778
6 · The paper itself

Abstract

The additions of oxygen and peroxide to residues that result when proteins are exposed to the free radicals produced using the Fenton reaction or X-rays have been studied for over a century. Nevertheless little is known about the impact these modifications have on protein crystal structures. Here evidence is presented that both kinds of modifications occur in protein crystals on a significant scale during the collection of X-ray diffraction data. For example, at least 538 of the 5,351 residues of protein molecules in the crystal used to obtain the structure for photosystem II described by the PDB accession number 3ARC became oxygenated during data collection.

Indexed as

Photosystem II Protein ComplexCrystallography, X-RayDatabases, ProteinModels, MolecularOxidation-ReductionOxygenProtein ConformationThermodynamicsX-Ray DiffractionX-RaysOxygenPhotosystem II Protein Complexdirect methodsnormalized electron density E-mapsphase problemphotosystem IIradiation chemistryX-ray crystallography

Identifiers

PMID27074249
PMCPMC4989999

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.