Evidence map›Paper›PMID 27072755›Full record

ArticleOrganic & biomolecular chemistry2016

Investigations on recyclisation and hydrolysis in avibactam mediated serine β-lactamase inhibition.

Hwanho Choi, Robert S Paton, Hwangseo Park, Christopher J Schofield

Open access · hybridAbstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Mechanism of proton transfer in class A β-lactamase catalysis and inhibition by avibactam.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Molecular Basis of Class A β-Lactamase Inhibition by Relebactam.Antimicrobial agents and chemotherapy · 2019
    Article
  10. Article
  11. Article
  12. Interaction of Avibactam with Class B Metallo-β-Lactamases.Antimicrobial agents and chemotherapy · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 3 countries.

Hwanho ChoiDepartment of Bioscience and Biotechnology, Sejong University, 209 Neungdong-ro, Kwangjin-gu, Seoul 143-747, Korea. hspark@sejong.ac.kr christopher.schofield@chem.ox.ac.uk and Chemical Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
Robert S PatonChemical Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
Hwangseo ParkDepartment of Bioscience and Biotechnology, Sejong University, 209 Neungdong-ro, Kwangjin-gu, Seoul 143-747, Korea. hspark@sejong.ac.kr christopher.schofield@chem.ox.ac.uk.
Christopher J SchofieldChemical Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
Oxfam · GBOxford Research Group · GBUniversity of Oxford · GBUniversity of Seoul · KR

Funding

Cancer Research UK 16466Medical Research Council MC_PC_12020Medical Research Council MC_PC_13073Medical Research Council MC_PC_14103
6 · The paper itself

Abstract

β-Lactams inhibit penicillin-binding proteins (PBPs) and serine β-lactamases by acylation of a nucleophilic active site serine. Avibactam is approved for clinical use in combination with ceftazidime, and is a breakthrough non β-lactam β-lactamase inhibitor also reacting via serine acylation. Molecular dynamics (MD) and quantum chemical calculations on avibactam-mediated inhibition of a clinically relevant cephalosporinase reveal that recyclisation of the avibactam derived carbamoyl complex is favoured over hydrolysis. In contrast, we show that analogous recyclisation in β-lactam mediated inhibition is disfavoured. Avibactam recyclisation is promoted by a proton shuttle, a 'structural' water protonating the nucleophilic serine, and stabilization of the negative charge developed on aminocarbonyl oxygen. The results imply the potential of calculations for distinguishing between bifurcating pathways during inhibition and in generating hypotheses for predicting resistance. The inability of β-lactams to undergo recyclisation may be an Achilles heel, but one that can be addressed by suitably functionalized reversibly binding inhibitors.

Indexed as

Azabicyclo Compoundsbeta-Lactamase Inhibitorsbeta-LactamasesHydrolysisMolecular ConformationMolecular Dynamics SimulationQuantum TheoryavibactamAzabicyclo Compoundsbeta-Lactamase Inhibitorsbeta-Lactamases

Identifiers

PMID27072755
PMCPMC4847122
OpenAlexW2338185756

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.