Evidence map›Paper›PMID 27071061›Full record

ArticlePloS one2016

Genome Wide Host Gene Expression Analysis in Chicken Lungs Infected with Avian Influenza Viruses.

Pradip B Ranaware, Anamika Mishra, Periyasamy Vijayakumar, Pradeep N Gandhale, Himanshu Kumar, Diwakar D Kulkarni, Ashwin Ashok Raut

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 80 citations in OpenAlex.

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  11. Selection for Resilience in Livestock Production Systems.International journal of molecular sciences · 2024
    Review
  12. Antiviral Effects of Avian Interferon-Stimulated Genes.Animals : an open access journal from MDPI · 2024
    Review
  13. Alterations in CX3CL1 Levels and Its Role in Viral Pathogenesis.International journal of molecular sciences · 2024
    Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Pradip B RanawarePathogenomics Laboratory, ICAR -National Institute of High Security Animal Diseases, OIE Reference lab for Avian Influenza, Bhopal, Madhya Pradesh, India.
Anamika MishraPathogenomics Laboratory, ICAR -National Institute of High Security Animal Diseases, OIE Reference lab for Avian Influenza, Bhopal, Madhya Pradesh, India.
Periyasamy VijayakumarPathogenomics Laboratory, ICAR -National Institute of High Security Animal Diseases, OIE Reference lab for Avian Influenza, Bhopal, Madhya Pradesh, India.
Pradeep N GandhalePathogenomics Laboratory, ICAR -National Institute of High Security Animal Diseases, OIE Reference lab for Avian Influenza, Bhopal, Madhya Pradesh, India.
Himanshu KumarLaboratory of Immunology, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhopal, Madhya Pradesh, India.
Diwakar D KulkarniPathogenomics Laboratory, ICAR -National Institute of High Security Animal Diseases, OIE Reference lab for Avian Influenza, Bhopal, Madhya Pradesh, India.
Ashwin Ashok RautPathogenomics Laboratory, ICAR -National Institute of High Security Animal Diseases, OIE Reference lab for Avian Influenza, Bhopal, Madhya Pradesh, India.ORCID http://orcid.org/0000-0002-4978-901X
National Institute of High Security Animal Diseases · INIndian Institute of Science Education and Research, Bhopal · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular pathogenesis of avian influenza infection varies greatly with individual bird species and virus strain. The molecular pathogenesis of the highly pathogenic avian influenza virus (HPAIV) or the low pathogenic avian influenza virus (LPAIV) infection in avian species remains poorly understood. Thus, global immune response of chickens infected with HPAI H5N1 (A/duck/India/02CA10/2011) and LPAI H9N2 (A/duck/India/249800/2010) viruses was studied using microarray to identify crucial host genetic components responsive to these infection. HPAI H5N1 virus induced excessive expression of type I IFNs (IFNA and IFNG), cytokines (IL1B, IL18, IL22, IL13, and IL12B), chemokines (CCL4, CCL19, CCL10, and CX3CL1) and IFN stimulated genes (OASL, MX1, RSAD2, IFITM5, IFIT5, GBP 1, and EIF2AK) in lung tissues. This dysregulation of host innate immune genes may be the critical determinant of the severity and the outcome of the influenza infection in chickens. In contrast, the expression levels of most of these genes was not induced in the lungs of LPAI H9N2 virus infected chickens. This study indicated the relationship between host immune genes and their roles in pathogenesis of HPAIV infection in chickens.

Indexed as

Gene Expression ProfilingGenomicsAnimalsChickensInfluenza A Virus, H5N1 SubtypeInfluenza A Virus, H9N2 SubtypeLungOligonucleotide Array Sequence AnalysisPhenotype

Identifiers

PMID27071061
PMCPMC4829244
OpenAlexW2336176844

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.