Evidence map›Paper›PMID 27070545›Full record

ArticlePLoS pathogens2016

ToxR Antagonizes H-NS Regulation of Horizontally Acquired Genes to Drive Host Colonization.

Misha I Kazi, Aaron R Conrado, Alexandra R Mey, Shelley M Payne, Bryan W Davies

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. ToxR activates theProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Serotype conversion geneFrontiers in microbiology · 2023
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Misha I KaziDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.
Aaron R ConradoDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.
Alexandra R MeyDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.
Shelley M PayneDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.
Bryan W DaviesDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, United States of America.
The University of Texas at Austin · US

Funding

Characterization of the ferrous iron transporter Feo in Vibrio choleraeR01AI091957 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI PAYNE, SHELLEY M. · 2011 to 2021
$3.9M
NIAID NIH HHS R01 AI091957NIAID NIH HHS R01AI091957
6 · The paper itself

Abstract

The virulence regulator ToxR initiates and coordinates gene expression needed by Vibrio cholerae to colonize the small intestine and cause disease. Despite its prominence in V. cholerae virulence, our understanding of the direct ToxR regulon is limited to four genes: toxT, ompT, ompU and ctxA. Here, we determine ToxR's genome-wide DNA-binding profile and demonstrate that ToxR is a global regulator of both progenitor genome-encoded genes and horizontally acquired islands that encode V. cholerae's major virulence factors and define pandemic lineages. We show that ToxR shares more than a third of its regulon with the histone-like nucleoid structuring protein H-NS, and antagonizes H-NS binding at shared binding locations. Importantly, we demonstrate that this regulatory interaction is the critical function of ToxR in V. cholerae colonization and biofilm formation. In the absence of H-NS, ToxR is no longer required for V. cholerae to colonize the infant mouse intestine or for robust biofilm formation. We further illustrate a dramatic difference in regulatory scope between ToxR and other prominent virulence regulators, despite similar predicted requirements for DNA binding. Our results suggest that factors in addition to primary DNA structure influence the ability of ToxR to recognize its target promoters.

Indexed as

AnimalsBacterial ProteinsBase SequenceBlotting, NorthernCholeraChromatin ImmunoprecipitationDNA-Binding ProteinsGene Expression Regulation, BacterialGene Transfer, HorizontalMiceMolecular Sequence DataOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionTranscription FactorsVibrio choleraeVirulenceBacterial ProteinsDNA-Binding ProteinsH-NS protein, bacteriatoxR protein, Vibrio choleraeTranscription FactorsVirulence Factors

Identifiers

PMID27070545
PMCPMC4829181
OpenAlexW2340873036

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.