Evidence map›Paper›PMID 27068744›Full record

ArticleThe Journal of biological chemistry2016

A Conserved C-terminal Element in the Yeast Doa10 and Human MARCH6 Ubiquitin Ligases Required for Selective Substrate Degradation.

Dimitrios Zattas, Jason M Berk, Stefan G Kreft, Mark Hochstrasser

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Squalene Epoxidase: Its Regulations and Links with Cancers.International journal of molecular sciences · 2024
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
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  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Endoplasmic Reticulum-Associated Protein Degradation.Cold Spring Harbor perspectives in biology · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Familial adult myoclonic epilepsy (FAME): clinical features, molecular characteristics, pathophysiological aspects and diagnostic work-up.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2021
    Article
  18. Review
  19. Article
  20. MARCH6 promotes Papillary Thyroid Cancer development by destabilizing DHX9.International journal of biological sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Dimitrios ZattasFrom the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 and.
Jason M BerkFrom the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 and.
Stefan G KreftFrom the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 and the Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78457 Konstanz, Germany.
Mark HochstrasserFrom the Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 and mark.hochstrasser@yale.edu.
Yale University · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Degradation of Short Lived Regulatory Protein in YeastR37GM046904 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 2009 to 2018
$3.6M
DEGRADTION OF SHORT-LIVED REGULATORY PROTEINS IN YEASTR01GM046904 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 1992 to 2020
$3.6M
Investigation of the Broad Substrate Specificity of an ER Membrane Ubiquitin LigaseF32GM113456 · NIGMS · YALE UNIVERSITY · PI BERK, JASON MICHAEL · 2015 to 2016
$112k
NIGMS NIH HHS F32 GM113456NIGMS NIH HHS R01 GM046904NIGMS NIH HHS R37 GM046904NIGMS NIH HHS T32 GM007223
6 · The paper itself

Abstract

Specific proteins are modified by ubiquitin at the endoplasmic reticulum (ER) and are degraded by the proteasome, a process referred to as ER-associated protein degradation. In Saccharomyces cerevisiae, two principal ER-associated protein degradation ubiquitin ligases (E3s) reside in the ER membrane, Doa10 and Hrd1. The membrane-embedded Doa10 functions in the degradation of substrates in the ER membrane, nuclear envelope, cytoplasm, and nucleoplasm. How most E3 ligases, including Doa10, recognize their protein substrates remains poorly understood. Here we describe a previously unappreciated but highly conserved C-terminal element (CTE) in Doa10; this cytosolically disposed 16-residue motif follows the final transmembrane helix. A conserved CTE asparagine residue is required for ubiquitylation and degradation of a subset of Doa10 substrates. Such selectivity suggests that the Doa10 CTE is involved in substrate discrimination and not general ligase function. Functional conservation of the CTE was investigated in the human ortholog of Doa10, MARCH6 (TEB4), by analyzing MARCH6 autoregulation of its own degradation. Mutation of the conserved Asn residue (N890A) in the MARCH6 CTE stabilized the normally short lived enzyme to the same degree as a catalytically inactivating mutation (C9A). We also report the localization of endogenous MARCH6 to the ER using epitope tagging of the genomic MARCH6 locus by clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9-mediated genome editing. These localization and CTE analyses support the inference that MARCH6 and Doa10 are functionally similar. Moreover, our results with the yeast enzyme suggest that the CTE is involved in the recognition and/or ubiquitylation of specific protein substrates.

Indexed as

Endoplasmic Reticulum-Associated DegradationAmino Acid SequenceConserved SequenceEndoplasmic ReticulumHeLa CellsHumansImmunoblottingMembrane ProteinsMicroscopy, FluorescenceSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidSubstrate SpecificityUbiquitinationUbiquitin-Protein LigasesUbiquitinsMARCHF6 protein, humanMembrane ProteinsSaccharomyces cerevisiae ProteinsSSM4 protein, S cerevisiaeUbiquitin-Protein LigasesUbiquitinsDoa10E3 ubiquitin ligaseendoplasmic-reticulum-associated protein degradation (ERAD)MARCH6proteasomeproteolysisTEB4ubiquitin

Identifiers

PMID27068744
PMCPMC4933261
OpenAlexW2321764034

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.