Evidence map›Paper›PMID 27068521›Full record

ArticlePlant molecular biology2016

The Hevea brasiliensis XIP aquaporin subfamily: genomic, structural and functional characterizations with relevance to intensive latex harvesting.

David Lopez, Maroua Ben Amira, Daniel Brown, Beatriz Muries, Nicole Brunel-Michac, Sylvain Bourgerie, Benoit Porcheron, Remi Lemoine, Hervé Chrestin, Ewan Mollison and 9 more

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. FungalBiomolecules · 2021
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  4. Article
  5. The Tonoplast Intrinsic Protein GeneBioMed research international · 2020
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 3 countries.

David LopezClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Maroua Ben AmiraClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Daniel BrownSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Beatriz MuriesInstitut des Sciences de la Vie, Université catholique de Louvain, 1348, Louvain-la-Neuve, Belgium.
Nicole Brunel-MichacClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Sylvain BourgerieLaboratoire de Biologie des Ligneux et des Grandes Cultures, Université d'Orléans, UPRES EA 1207, INRA-USC1328, 45067, Orléans, France.
Benoit PorcheronEcologie, Biologie des Interactions, Equipe SEVE, UMR 7267 CNRS/Université de Poitiers, Bâtiment B31, TSA 51106, 86073, Poitiers Cedex 9, France.
Remi LemoineEcologie, Biologie des Interactions, Equipe SEVE, UMR 7267 CNRS/Université de Poitiers, Bâtiment B31, TSA 51106, 86073, Poitiers Cedex 9, France.
Hervé ChrestinInstitut de Recherche pour le Développement, UR060/CEFE-CNRS, 1029 route de Mende, 34032, Montpellier, France.
Ewan MollisonBiotechnology Unit, Tun Abdul Razak Research Centre, Brickendonbury, Hertford, UK.
Alessandra Di ColaBiotechnology Unit, Tun Abdul Razak Research Centre, Brickendonbury, Hertford, UK.
Lorenzo FrigerioSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Jean-Louis JulienClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Aurélie Gousset-DupontClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Boris FumanalClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Philippe LabelClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Valérie Pujade-RenaudClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France.
Daniel AuguinLaboratoire de Biologie des Ligneux et des Grandes Cultures, Université d'Orléans, UPRES EA 1207, INRA-USC1328, 45067, Orléans, France. auguin@univ-orleans.fr.
Jean-Stéphane VenisseClermont Université, Université Blaise Pascal, INRA, UMR 547 PIAF, BP 10448, 63000, Clermont-Ferrand, France. j-stephane.venisse@univ-bpclermont.fr.
Université Clermont Auvergne · FRClermont Université · FRTun Abdul Razak Research Centre · GBCentre National de la Recherche Scientifique · FRInstitut de Recherche pour le Développement · FRPhysiologie, Ecologie et Environnement · FRUCLouvain · BEUniversité de Poitiers · FRUniversité d'Orléans · FRUniversity of Warwick · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-Intrinsic Proteins (XIP) were recently identified in a narrow range of plants as a full clade within the aquaporins. These channels reportedly facilitate the transport of a wide range of hydrophobic solutes. The functional roles of XIP in planta remain poorly identified. In this study, we found three XIP genes (HbXIP1;1, HbXIP2;1 and HbXIP3;1) in the Hevea brasiliensis genome. Comprehensive bioinformatics, biochemical and structural analyses were used to acquire a better understanding of this AQP subfamily. Phylogenetic analysis revealed that HbXIPs clustered into two major groups, each distributed in a specific lineage of the order Malpighiales. Tissue-specific expression profiles showed that only HbXIP2;1 was expressed in all the vegetative tissues tested (leaves, stem, bark, xylem and latex), suggesting that HbXIP2;1 could take part in a wide range of cellular processes. This is particularly relevant to the rubber-producing laticiferous system, where this isoform was found to be up-regulated during tapping and ethylene treatments. Furthermore, the XIP transcriptional pattern is significantly correlated to latex production level. Structural comparison with SoPIP2;1 from Spinacia oleracea species provides new insights into the possible role of structural checkpoints by which HbXIP2;1 ensures glycerol transfer across the membrane. From these results, we discuss the physiological involvement of glycerol and HbXIP2;1 in water homeostasis and carbon stream of challenged laticifers. The characterization of HbXIP2;1 during rubber tree tapping lends new insights into molecular and physiological response processes of laticifer metabolism in the context of latex exploitation.

Indexed as

Genome, PlantAquaporinsComputational BiologyGene Expression Regulation, PlantHeveaLatexModels, MolecularMultigene FamilyPhylogenyPlant ProteinsRNA, MessengerStructural Homology, ProteinSubcellular FractionsAquaporinsLatexPlant ProteinsRNA, MessengerCell homeostasisEvolutionGlycerolHevea brasiliensisLatexXIP aquaporin

Identifiers

PMID27068521
OpenAlexW2335335239

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.