Evidence map›Paper›PMID 27068015›Full record

ArticleBMC plant biology2016

Fine-mapping of qGW4.05, a major QTL for kernel weight and size in maize.

Lin Chen, Yong-xiang Li, Chunhui Li, Xun Wu, Weiwei Qin, Xin Li, Fuchao Jiao, Xiaojing Zhang, Dengfeng Zhang, Yunsu Shi and 3 more

Abstract read
In one paragraph

Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Genetic Architecture of Grain Yield-Related Traits in Sorghum and Maize.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Fine mapping of a kernel length-related gene with potential value for maize breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  12. Genetic and molecular control of grain yield in maize.Molecular breeding : new strategies in plant improvement · 2021
    Article
  13. Maize kernel development.Molecular breeding : new strategies in plant improvement · 2021
    Review
  14. Article
  15. Temporal profiling of essential amino acids in developing maize kernel of normal,Physiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Fine mapping and candidate gene analysis of qhkw5-3, a major QTL for kernel weight in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lin ChenInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Yong-xiang LiInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Chunhui LiInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Xun WuInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Weiwei QinInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Xin LiInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Fuchao JiaoInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Xiaojing ZhangInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Dengfeng ZhangInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Yunsu ShiInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Yanchun SongInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China.
Yu LiInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China. liyu03@caas.cn.
Tianyu WangInstitute of Crop Science, Chinese Academy of Agricultural Sciences, National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Beijing, 100081, China. wangtianyu@263.net.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundKernel weight and size are important components of grain yield in cereals. Although some information is available concerning the map positions of quantitative trait loci (QTL) for kernel weight and size in maize, little is known about the molecular mechanisms of these QTLs. qGW4.05 is a major QTL that is associated with kernel weight and size in maize. We combined linkage analysis and association mapping to fine-map and identify candidate gene(s) at qGW4.05.

resultsQTL qGW4.05 was fine-mapped to a 279.6-kb interval in a segregating population derived from a cross of Huangzaosi with LV28. By combining the results of regional association mapping and linkage analysis, we identified GRMZM2G039934 as a candidate gene responsible for qGW4.05. Candidate gene-based association mapping was conducted using a panel of 184 inbred lines with variable kernel weights and kernel sizes. Six polymorphic sites in the gene GRMZM2G039934 were significantly associated with kernel weight and kernel size.

conclusionThe results of linkage analysis and association mapping revealed that GRMZM2G039934 is the most likely candidate gene for qGW4.05. These results will improve our understanding of the genetic architecture and molecular mechanisms underlying kernel development in maize.

Indexed as

Chromosome MappingChromosomes, PlantEdible GrainGenes, PlantGenetic LinkageGenetic MarkersGenome, PlantGenotypeHaplotypesPhenotypePlant BreedingPolymorphism, GeneticQuantitative Trait LociZea maysGenetic MarkersAssociation mappingFine-mappingKernel sizeKernel weightMaize

Identifiers

PMID27068015
PMCPMC4828868

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.