ArticleBMC plant biology2016
Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.).
Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.
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79 citing papers in PubMed.
- Genome-wide integrative dissection of genetic basis of fiber color and whiteness regulation in upland cotton (Gossypium hirsutum).BMC biology · 2026Article
- Combined genome and transcriptome analysis of boll weight and lint percentage traits in Gossypium barbadense.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Integrative QTL mapping and candidate gene analysis for main stem node number in soybean.BMC plant biology · 2025Article
- QTL Mapping and Candidate Gene Analysis for Cotton Fiber Quality and Early Maturity Using FPlants (Basel, Switzerland) · 2025Article
- Exploring Metabolic Pathways and Gene Mining During Cotton Flower Bud Differentiation Stages Based on Transcriptomics and Metabolomics.International journal of molecular sciences · 2025Article
- Genome-wide identification and comparative analysis ofFrontiers in plant science · 2025Article
- Drought response revealed by chromatin organization variation and transcriptional regulation in cotton.BMC biology · 2024Article
- Genomic and co-expression network analyses reveal candidate genes for oil accumulation based on an introgression population in Upland cotton (Gossypium hirsutum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- An aldehyde dehydrogenase gene,Frontiers in plant science · 2024Article
- Genetic dissection of lint percentage in short-season cotton using combined QTL mapping and RNA-seq.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Construction of the first high-density genetic linkage map and QTL mapping of flavonoid and leaf-size related traits in Epimedium.BMC plant biology · 2023Article
- Lint percentage and boll weight QTLs in three excellent upland cotton (Gossypium hirsutum): ZR014121, CCRI60, and EZ60.BMC plant biology · 2023Article
- The CCCH-Type Zinc-Finger Protein GhC3H20 Enhances Salt Stress Tolerance inInternational journal of molecular sciences · 2023Article
- Construction of a high-resolution genetic map and identification of single nucleotide polymorphism markers relevant to flower stalk height in onion.Frontiers in plant science · 2023Article
- Expressed genes and their new alleles identification during fibre elongation reveal the genetic factors underlying improvements of fibre length in cotton.Plant biotechnology journal · 2022Article
- Candidate genes for anthocyanin pigmentation in rice stem revealed by GWAS and whole-genome resequencing.The plant genome · 2022Article
- Identification of candidate genes involved in salt stress response at germination and seedling stages by QTL mapping in upland cotton.G3 (Bethesda, Md.) · 2022Article
- QTL mapping for growth-related traits by constructing the first genetic linkage map in Simao pine.BMC plant biology · 2022Article
- Detection of Stable Elite Haplotypes and Potential Candidate Genes of Boll Weight Across Multiple Environments via GWAS in Upland Cotton.Frontiers in plant science · 2022Article
- GBS-SNP and SSR based genetic mapping and QTL analysis for drought tolerance in upland cotton.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
19 more citing papers are in PubMed but not listed here.
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23 authors.
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Abstract
backgroundUpland Cotton (Gossypium hirsutum) is one of the most important worldwide crops it provides natural high-quality fiber for the industrial production and everyday use. Next-generation sequencing is a powerful method to identify single nucleotide polymorphism markers on a large scale for the construction of a high-density genetic map for quantitative trait loci mapping.
resultsIn this research, a recombinant inbred lines population developed from two upland cotton cultivars 0-153 and sGK9708 was used to construct a high-density genetic map through the specific locus amplified fragment sequencing method. The high-density genetic map harbored 5521 single nucleotide polymorphism markers which covered a total distance of 3259.37 cM with an average marker interval of 0.78 cM without gaps larger than 10 cM. In total 18 quantitative trait loci of boll weight were identified as stable quantitative trait loci and were detected in at least three out of 11 environments and explained 4.15-16.70 % of the observed phenotypic variation. In total, 344 candidate genes were identified within the confidence intervals of these stable quantitative trait loci based on the cotton genome sequence. These genes were categorized based on their function through gene ontology analysis, Kyoto Encyclopedia of Genes and Genomes analysis and eukaryotic orthologous groups analysis.
conclusionsThis research reported the first high-density genetic map for Upland Cotton (Gossypium hirsutum) with a recombinant inbred line population using single nucleotide polymorphism markers developed by specific locus amplified fragment sequencing. We also identified quantitative trait loci of boll weight across 11 environments and identified candidate genes within the quantitative trait loci confidence intervals. The results of this research would provide useful information for the next-step work including fine mapping, gene functional analysis, pyramiding breeding of functional genes as well as marker-assisted selection.
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