Evidence map›Paper›PMID 27066839›Full record

ArticleEpigenomics2016

Tagging methyl-CpG-binding domain proteins reveals different spatiotemporal expression and supports distinct functions.

Kathleen H Wood, Brian S Johnson, Sarah A Welsh, Jun Y Lee, Yue Cui, Elizabeth Krizman, Edward S Brodkin, Julie A Blendy, Michael B Robinson, Marisa S Bartolomei and 1 more

Open access · greenAbstract read
In one paragraph

Article in Epigenomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  6. UsingBiology · 2023
    Article
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  14. Review
  15. DNA Methylation-Governed Gene Expression in Autoimmune Arthritis.International journal of molecular sciences · 2019
    Review
  16. Review
  17. Review
  18. DNA Methylation and Adult Neurogenesis.Brain plasticity (Amsterdam, Netherlands) · 2017
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Kathleen H WoodDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Brian S JohnsonDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Sarah A WelshDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Jun Y LeeDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Yue CuiDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Elizabeth KrizmanChildren's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA.
Edward S BrodkinDepartment of Psychiatry, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Julie A BlendyDepartment of Pharmacology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Michael B RobinsonChildren's Hospital of Philadelphia Research Institute, Philadelphia, PA 19104, USA.
Marisa S BartolomeiDepartment of Cell & Developmental Biology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
Zhaolan ZhouDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.
University of Pennsylvania · USChildren's Hospital of Philadelphia · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
NMDA Receptor Hypofunction in the Amygdala of Schizophrenia PatientsP50MH096891 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI BILKER, WARREN B. · 2012 to 2016
$10.6M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
The Intellectual and Developmental Disabilities Research Center at CHOP/PennU54HD086984 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI PUTT, MARY E. · 2016 to 2020
$6.3M
Defining the Epigenetic Architecture Associated with Early-Life StressR01MH091850 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI ZHOU, ZHAOLAN · 2010 to 2014
$2.4M
NICHD NIH HHS P30 HD018655NICHD NIH HHS P30 HD18655NICHD NIH HHS U54 HD086984NIEHS NIH HHS P30 ES013508NIGMS NIH HHS T32 GM008216NIGMS NIH HHS T32GM008216NIMH NIH HHS P50 MH096891NIMH NIH HHS P50MH096891NIMH NIH HHS R01 MH091850
6 · The paper itself

Abstract

aimDNA methylation is recognized by methyl-CpG-binding domain (MBD) proteins. Multiple MBDs are linked to neurodevelopmental disorders in humans and mice. However, the functions of MBD2 are poorly understood. We characterized Mbd2 knockout mice and determined spatiotemporal expression of MBDs and MBD2-NuRD (nucleosome remodeling deacetylase) interactions. EXPERIMENTAL PROCEDURES: We analyzed behavioral phenotypes, generated biotin-tagged MBD1 and MBD2 knockin mice, and performed biochemical studies of MBD2-NuRD.

resultsMost behavioral measures are minimally affected in Mbd2 knockout mice. In contrast to other MBDs, MBD2 shows distinct expression patterns.

conclusionUnlike most MBDs, MBD2 is ubiquitously expressed in all tissues examined and appears dispensable for brain functions measured in this study. We provide novel genetic tools and reveal new directions to investigate MBD2 functions in vivo.

Indexed as

Behavior, AnimalDNA MethylationAnimalsBiogenic AminesBody WeightBrainCpG IslandsDNA-Binding ProteinsFemaleGene Expression RegulationGene Knock-In TechniquesMaleMaze LearningMethyl-CpG-Binding Protein 2Mi-2 Nucleosome Remodeling and Deacetylase ComplexMiceBiogenic AminesDNA-Binding ProteinsMbd1 protein, mouseMbd2 protein, mouseMbd3 protein, mouseMecp2 protein, mouseMethyl-CpG-Binding Protein 2Mi-2 Nucleosome Remodeling and Deacetylase ComplexTranscription Factorschromatin regulationDNA-binding proteinDNA methylationgene knockoutMBD1MBD2MeCP2methyl-CpG-binding domain proteinmouse geneticsNuRD

Identifiers

PMID27066839
PMCPMC4928502
OpenAlexW2341126117

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.