Evidence map›Paper›PMID 27066825›Full record

ArticleBMC genomics2016

Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1.

Rania Nakad, L Basten Snoek, Wentao Yang, Sunna Ellendt, Franziska Schneider, Timm G Mohr, Lone Rösingh, Anna C Masche, Philip C Rosenstiel, Katja Dierking and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 60 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Rania NakadDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
L Basten SnoekLaboratory of Nematology, Wageningen University, Wageningen, 6708 PB, The Netherlands.
Wentao YangDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
Sunna EllendtDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
Franziska SchneiderDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
Timm G MohrDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
Lone RösinghDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
Anna C MascheDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
Philip C RosenstielInstitute for Clinical Molecular Biology, University of Kiel, 24098, Kiel, Germany.
Katja DierkingDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany.
Jan E KammengaLaboratory of Nematology, Wageningen University, Wageningen, 6708 PB, The Netherlands.
Hinrich SchulenburgDepartment of Evolutionary Ecology and Genetics, Zoological Institute, University of Kiel, 24098, Kiel, Germany. hschulenburg@zoologie.uni-kiel.de.
Kiel University · DEWageningen University & Research · NL

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

backgroundThe invertebrate immune system comprises physiological mechanisms, physical barriers and also behavioral responses. It is generally related to the vertebrate innate immune system and widely believed to provide nonspecific defense against pathogens, whereby the response to different pathogen types is usually mediated by distinct signalling cascades. Recent work suggests that invertebrate immune defense can be more specific at least at the phenotypic level. The underlying genetic mechanisms are as yet poorly understood.

resultsWe demonstrate in the model invertebrate Caenorhabditis elegans that a single gene, a homolog of the mammalian neuropeptide Y receptor gene, npr-1, mediates contrasting defense phenotypes towards two distinct pathogens, the Gram-positive Bacillus thuringiensis and the Gram-negative Pseudomonas aeruginosa. Our findings are based on combining quantitative trait loci (QTLs) analysis with functional genetic analysis and RNAseq-based transcriptomics. The QTL analysis focused on behavioral immune defense against B. thuringiensis, using recombinant inbred lines (RILs) and introgression lines (ILs). It revealed several defense QTLs, including one on chromosome X comprising the npr-1 gene. The wildtype N2 allele for the latter QTL was associated with reduced defense against B. thuringiensis and thus produced an opposite phenotype to that previously reported for the N2 npr-1 allele against P. aeruginosa. Analysis of npr-1 mutants confirmed these contrasting immune phenotypes for both avoidance behavior and nematode survival. Subsequent transcriptional profiling of C. elegans wildtype and npr-1 mutant suggested that npr-1 mediates defense against both pathogens through p38 MAPK signaling, insulin-like signaling, and C-type lectins. Importantly, increased defense towards P. aeruginosa seems to be additionally influenced through the induction of oxidative stress genes and activation of GATA transcription factors, while the repression of oxidative stress genes combined with activation of Ebox transcription factors appears to enhance susceptibility to B. thuringiensis.

conclusionsOur findings highlight the role of a single gene, npr-1, in fine-tuning nematode immune defense, showing the ability of the invertebrate immune system to produce highly specialized and potentially opposing immune responses via single regulatory genes.

Indexed as

Quantitative Trait LociAnimalsBacillus thuringiensisCaenorhabditis elegansCaenorhabditis elegans ProteinsImmunity, InnatePseudomonas aeruginosaReceptors, Neuropeptide YSignal TransductionTranscriptomeCaenorhabditis elegans ProteinsNPR-1 protein, C elegansReceptors, Neuropeptide YCaenorhabditis elegansImmune specificityInnate immunityPathogen avoidance behaviorQTL analysis

Identifiers

PMID27066825
PMCPMC4827197
OpenAlexW2318721507

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.