Evidence map›Paper›PMID 27066748›Full record

ArticleStructure (London, England : 1993)2016

Crystal Structure of PKG I:cGMP Complex Reveals a cGMP-Mediated Dimeric Interface that Facilitates cGMP-Induced Activation.

Jeong Joo Kim, Robin Lorenz, Stefan T Arold, Albert S Reger, Banumathi Sankaran, Darren E Casteel, Friedrich W Herberg, Choel Kim

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. The activation ofPlant direct · 2024
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  6. Review
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  8. Review
  9. Cyclic nucleotide selectivity of protein kinase G isozymes.Protein science : a publication of the Protein Society · 2021
    Review
  10. Article
  11. Article
  12. Mechanism of allosteric inhibition in theThe Journal of biological chemistry · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Jeong Joo KimDepartment of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA; Department of Biochemistry, University of Kassel, Kassel, Hesse 34132, Germany.
Robin LorenzDepartment of Biochemistry, University of Kassel, Kassel, Hesse 34132, Germany.
Stefan T AroldKing Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center, Division of Biological and Environmental Sciences and Engineering, Thuwal 23955-6900, Saudi Arabia.
Albert S RegerDepartment of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA.
Banumathi SankaranBerkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Darren E CasteelDepartment of Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Friedrich W HerbergDepartment of Biochemistry, University of Kassel, Kassel, Hesse 34132, Germany.
Choel KimDepartment of Pharmacology, Baylor College of Medicine, Houston, TX 77030, USA; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address: ckim@bcm.edu.
University of Kassel · DEBaylor College of Medicine · USKing Abdullah University of Science and Technology · SALawrence Berkeley National Laboratory · USUniversity of California San Diego · US

Funding

Targeting mechanisms of cGMP dependent protein kinases by peptide arrays and crysR01GM090161 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI KIM, CHOEL WOONG · 2010 to 2018
$2.9M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
TARGETING CGMP KINASES TO DEVELOP NEW THERAPEUTICS FOR HYPERTENSIVE DISEASESR21HL111953 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI KIM, CHOEL WOONG · 2012 to 2013
$421k
NHLBI NIH HHS R21 HL111953NIGMS NIH HHS R01 GM090161NIGMS NIH HHS R01 GM105404
6 · The paper itself

Abstract

Cyclic guanosine monophosphate (cGMP)-dependent protein kinase (PKG) is a key regulator of smooth muscle and vascular tone and represents an important drug target for treating hypertensive diseases and erectile dysfunction. Despite its importance, its activation mechanism is not fully understood. To understand the activation mechanism, we determined a 2.5 Å crystal structure of the PKG I regulatory (R) domain bound with cGMP, which represents the activated state. Although we used a monomeric domain for crystallization, the structure reveals that two R domains form a symmetric dimer where the cGMP bound at high-affinity pockets provide critical dimeric contacts. Small-angle X-ray scattering and mutagenesis support this dimer model, suggesting that the dimer interface modulates kinase activation. Finally, structural comparison with the homologous cyclic AMP-dependent protein kinase reveals that PKG is drastically different from protein kinase A in its active conformation, suggesting a novel activation mechanism for PKG.

Indexed as

Molecular Docking SimulationBinding SitesCrystallography, X-RayCyclic GMPCyclic GMP-Dependent Protein Kinase Type IHumansMolecular Dynamics SimulationProtein BindingProtein MultimerizationCyclic GMPCyclic GMP-Dependent Protein Kinase Type Iallosteric activationcGMP-dependent protein kinasecrystal structurecyclic nucleotide-binding domainNO-cGMP signalingsecond messengerssmall-angle X-ray scattering

Identifiers

PMID27066748
PMCPMC4856591
OpenAlexW2326671771

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.