Evidence map›Paper›PMID 27066196›Full record

ArticleStandards in genomic sciences2016

The genome anatomy of Corynebacterium pseudotuberculosis VD57 a highly virulent strain causing Caseous lymphadenitis.

Sintia Almeida, Sandeep Tiwari, Diego Mariano, Flávia Souza, Syed Babar Jamal, Nilson Coimbra, Roberto Tadeu Raittz, Fernanda Alves Dorella, Alex Fiorine de Carvalho, Felipe Luiz Pereira and 10 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

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  12. First genome sequencing and comparative analyses ofStandards in genomic sciences · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Sintia AlmeidaInstitute of Biologic Sciences, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Sandeep TiwariInstitute of Biologic Sciences, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Diego MarianoInstitute of Biologic Sciences, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Flávia SouzaInstitute of Biologic Sciences, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Syed Babar JamalInstitute of Biologic Sciences, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Nilson CoimbraLaboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paraná, Curitiba, PR Brazil.
Roberto Tadeu RaittzLaboratory of Bioinformatics, Professional and Technological Education Sector, Federal University of Paraná, Curitiba, PR Brazil.
Fernanda Alves DorellaAquacen - National Reference Laboratory for Aquatic Animal Diseases, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Alex Fiorine de CarvalhoAquacen - National Reference Laboratory for Aquatic Animal Diseases, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Felipe Luiz PereiraAquacen - National Reference Laboratory for Aquatic Animal Diseases, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Siomar de Castro SoaresAquacen - National Reference Laboratory for Aquatic Animal Diseases, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Carlos Augusto Gomes LealAquacen - National Reference Laboratory for Aquatic Animal Diseases, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Debmalya BarhCentre for Genomics and Applied Gene Technology, Institute of Integrative Omics and Applied Biotechnology (IIOAB), Nonakuri, Purba Medinipur, West Bengal India.
Preetam GhoshDepartment of Computer Science, Virginia Commonwealth University, Richmond, VA USA.
Henrique FigueiredoAquacen - National Reference Laboratory for Aquatic Animal Diseases, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Lília Ferreira Moura-CostaInstitute of Health Sciences, Federal University of Bahia, Salvador, BA Brazil.
Ricardo Wagner PortelaInstitute of Health Sciences, Federal University of Bahia, Salvador, BA Brazil.
Roberto MeyerInstitute of Health Sciences, Federal University of Bahia, Salvador, BA Brazil.
Artur SilvaInstitute of Biologic Sciences, Federal University of Para, Belem, PA Brazil.
Vasco AzevedoInstitute of Biologic Sciences, Federal University of Minas Gerais, Belo Horizonte, MG Brazil.
Universidade Federal de Minas Gerais · BRUniversidade Federal da Bahia · BRUniversidade Federal do Paraná · BRInstitute of Bioinformatics and Applied Biotechnology · INUniversidade Federal do Pará · BRVirginia Commonwealth University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Corynebacterium pseudotuberculosis strain VD57 (Cp_VD57), a highly virulent, nonmotile, non-sporulating, and a mesophilic bacterium, was isolated from a goat's granulomatous lesion in the municipality of Juazeiro, Bahia State, Brazil. Here, we describe a set of features of the strain, together with the details of its complete genome sequence and annotation. The genome comprises of a 2.5 Mbp long, single circular genome with 2,101 protein-coding genes, 12 rRNA, 49 tRNA and 47 pseudogenes and a G + C content of 52.85 %. Genetic variation was detected in Cp_VD57 using C. pseudotuberculosis strain 1002 as reference, wherein small genomic insertions and deletions were identified. The comparative analysis of the genome sequence provides means to better understand the host pathogen interactions of this strain and can also help us to understand the molecular and genetic basis of virulence of this bacterium.

Indexed as

Biovar ovisCaseous lymphadenitisCorynebacterium pseudotuberculosisGenome sequencingGoatGram-positive pathogenIon Torrent PGM

Identifiers

PMID27066196
PMCPMC4826502
OpenAlexW2331745464

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.