ArticleFrontiers in plant science2016
Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.
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Who cites it
38 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.
- Meta-analysis of seed weight QTLome using a consensus and highly dense genetic map in Brassica napus L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Pooled it
- Role of AtCPK5 and AtCPK6 in the regulation of the plant immune response triggered by rhamnolipids in Arabidopsis.PloS one · 2026Article
- Dissection of quantitative trait nucleotides and candidate genes associated with agronomic and yield-related traits under drought stress in rapeseed varieties: integration of genome-wide association study and transcriptomic analysis.Frontiers in plant science · 2024Article
- Homoeologous non-reciprocal translocation explains a major QTL for seed lignin content in oilseed rape (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Estimation of genetic diversity using seed storage protein (SSP) profiling in wild and cultivated species of Cicer L.Molecular biology reports · 2023Article
- Genome-Wide Association Studies of Salt Tolerance at the Seed Germination Stage and Yield-Related Traits inInternational journal of molecular sciences · 2022Article
- Transcriptome and Regional Association Analyses Reveal the Effects of Oleosin Genes on the Accumulation of Oil Content inPlants (Basel, Switzerland) · 2022Article
- Construction of a Quantitative Genomic Map, Identification and Expression Analysis of Candidate Genes for Agronomic and Disease-Related Traits inFrontiers in plant science · 2022Article
- Genome-wide association, RNA-seq and iTRAQ analyses identify candidate genes controlling radicle length of wheat.Frontiers in plant science · 2022Article
- Genomic Regions Associated With Seed Meal Quality Traits inFrontiers in plant science · 2022Article
- Investigation ofHorticulture research · 2022Article
- SNP- and Haplotype-Based GWAS of Flowering-Related Traits inPlants (Basel, Switzerland) · 2021Article
- The Bnapus50K array: a quick and versatile genotyping tool for Brassica napus genomic breeding and research.G3 (Bethesda, Md.) · 2021Article
- Mapping of seed quality traits in the C genome of Brassica napus by using a population carrying genome content of B. oleracea and their effect on other traits.The plant genome · 2021Article
- Genetics of days to flowering, maturity and plant height in natural and derived forms of Brassica rapa L.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Identification and Development of KASP Markers for Novel MutantFrontiers in plant science · 2021Article
- Genetic dissection of the shoot and root ionomes of Brassica napus grown with contrasting phosphate supplies.Annals of botany · 2020Article
- Dissection of genetic architecture for glucosinolate accumulations in leaves and seeds of Brassica napus by genome-wide association study.Plant biotechnology journal · 2020Article
- Strong temporal dynamics of QTL action on plant growth progression revealed through high-throughput phenotyping in canola.Plant biotechnology journal · 2020Article
- Integrating GWAS, linkage mapping and gene expression analyses reveals the genetic control of growth period traits in rapeseed (Biotechnology for biofuels · 2020Article
Corrections and comments
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Authors and funding
7 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In Brassica napus breeding, traits related to commercial success are of highest importance for plant breeders. However, such traits can only be assessed in an advanced developmental stage. Molecular markers genetically linked to such traits have the potential to accelerate the breeding process of B. napus by marker-assisted selection. Therefore, the objectives of this study were to identify (i) genome regions associated with the examined agronomic and seed quality traits, (ii) the interrelationship of population structure and the detected associations, and (iii) candidate genes for the revealed associations. The diversity set used in this study consisted of 405 B. napus inbred lines which were genotyped using a 6K single nucleotide polymorphism (SNP) array and phenotyped for agronomic and seed quality traits in field trials. In a genome-wide association study, we detected a total of 112 associations between SNPs and the seed quality traits as well as 46 SNP-trait associations for the agronomic traits with a P < 1.28e-05 (Bonferroni correction of α = 0.05) for the inbreds of the spring and winter trial. For the seed quality traits, a single SNP-sulfur concentration in seeds (SUL) association explained up to 67.3% of the phenotypic variance, whereas for the agronomic traits, a single SNP-blossom color (BLC) association explained up to 30.2% of the phenotypic variance. In a basic local alignment search tool (BLAST) search within a distance of 2.5 Mbp around these SNP-trait associations, 62 hits of potential candidate genes with a BLAST-score of ≥100 and a sequence identity of ≥70% to A. thaliana or B. rapa could be found for the agronomic SNP-trait associations and 187 hits of potential candidate genes for the seed quality SNP-trait associations.
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