ArticleFrontiers in plant science2016
Transcriptome Response Mediated by Cold Stress in Lotus japonicus.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 74 citations in OpenAlex.
- Comparative proteomics analysis of contrasting Camellia sinensis genotypes exposed to cold acclimation and freezing stress.BMC plant biology · 2025Article
- Multi-Omics Analysis Provides Insights into Green Soybean in Response to Cold Stress.Metabolites · 2024Article
- Transcriptome analysis of Sesuvium portulacastrum L. uncovers key genes and pathways involved in root formation in response to low-temperature stress.Plant molecular biology · 2024Article
- Comparative transcriptomic analysis of germinating rice seedlings to individual and combined anaerobic and cold stress.BMC genomics · 2023Article
- A novel prognostic related lncRNA signature associated with amino acid metabolism in glioma.Frontiers in immunology · 2023Article
- Transcriptome-based gene regulatory network analyses of differential cold tolerance of two tobacco cultivars.BMC plant biology · 2022Article
- STN7 Kinase Is Essential forInternational journal of molecular sciences · 2022Article
- Low Temperature Stress Tolerance: An Insight Into the Omics Approaches for Legume Crops.Frontiers in plant science · 2022Review
- Evaluation of drought resistance and transcriptome analysis for the identification of drought-responsive genes in Iris germanica.Scientific reports · 2021Article
- Transcriptome Analysis Reveals Key Pathways and Candidate Genes Controlling Seed Development and Size in Ricebean (Frontiers in genetics · 2021Article
- Article
- Stress-regulated elements inPeerJ · 2021Article
- Gene Expression and KPlants (Basel, Switzerland) · 2020Article
- Article
- Transcriptome analysis reveals plasticity in gene regulation due to environmental cues in Primula sikkimensis, a high altitude plant species.BMC genomics · 2019Article
- Identification of Genes Differentially Expressed in Response to Cold inPlants (Basel, Switzerland) · 2019Article
- An eukaryotic elongation factor 2 from Medicago falcata (MfEF2) confers cold tolerance.BMC plant biology · 2019Article
- Transcriptomic response of durum wheat to cold stress at reproductive stage.Molecular biology reports · 2019Article
- The increase of photosynthetic carbon assimilation as a mechanism of adaptation to low temperature in Lotus japonicus.Scientific reports · 2019Article
- Transcriptome profiling of rubber tree (Hevea brasiliensis) discovers candidate regulators of the cold stress response.Genes & genomics · 2018Article
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Members of the Lotus genus are important as agricultural forage sources under marginal environmental conditions given their high nutritional value and tolerance of various abiotic stresses. However, their dry matter production is drastically reduced in cooler seasons, while their response to such conditions is not well studied. This paper analyzes cold acclimation of the genus by studying Lotus japonicus over a stress period of 24 h. High-throughput RNA sequencing was used to identify and classify 1077 differentially expressed genes, of which 713 were up-regulated and 364 were down-regulated. Up-regulated genes were principally related to lipid, cell wall, phenylpropanoid, sugar, and proline regulation, while down-regulated genes affected the photosynthetic process and chloroplast development. Together, a total of 41 cold-inducible transcription factors were identified, including members of the AP2/ERF, NAC, MYB, and WRKY families; two of them were described as putative novel transcription factors. Finally, DREB1/CBFs were described with respect to their cold stress expression profiles. This is the first transcriptome profiling of the model legume L. japonicus under cold stress. Data obtained may be useful in identifying candidate genes for breeding modified species of forage legumes that more readily acclimate to low temperatures.
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