Evidence map›Paper›PMID 27065196›Full record

ArticleNature structural & molecular biology2016

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity.

Melissa M Matthews, Justin M Thomas, Yuxuan Zheng, Kiet Tran, Kelly J Phelps, Anna I Scott, Jocelyn Havel, Andrew J Fisher, Peter A Beal

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 162 papers.

0numbers the graph read from it
0cells of the map it votes in
162citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

162 citing papers in PubMed, 229 citations in OpenAlex.

  1. Review
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  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Evolution of Engineered ADAR-Based RNA Editing Systems.International journal of molecular sciences · 2026
    Review
  13. Article
  14. Article
  15. ADAR-GPT: A continually fine-tuned language model for predicting A-to-I RNA editing sites.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  16. Article
  17. Article
  18. Clickable RNA via 4'-Bioconjugate chemistry · 2025
    Article
  19. Article
  20. Review

102 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Melissa M MatthewsDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Justin M ThomasDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Yuxuan ZhengDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Kiet TranDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Kelly J PhelpsDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Anna I ScottDepartment of Molecular and Cellular Biology, University of California, Davis, Davis, California, USA.
Jocelyn HavelDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Andrew J FisherDepartment of Chemistry, University of California, Davis, Davis, California, USA.
Peter A BealDepartment of Chemistry, University of California, Davis, Davis, California, USA.
University of California, Davis · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
The Bioorganic Chemistry Of RNA Editing By ADARSR01GM061115 · NIGMS · UNIVERSITY OF UTAH · PI BEAL, PETER A. · 2001 to 2020
$4.5M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
NCRR NIH HHS S10 RR029205NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM061115NIGMS NIH HHS T32 GM007377
6 · The paper itself

Abstract

Adenosine deaminases acting on RNA (ADARs) are editing enzymes that convert adenosine to inosine in duplex RNA, a modification reaction with wide-ranging consequences in RNA function. Understanding of the ADAR reaction mechanism, the origin of editing-site selectivity, and the effect of mutations is limited by the lack of high-resolution structural data for complexes of ADARs bound to substrate RNAs. Here we describe four crystal structures of the human ADAR2 deaminase domain bound to RNA duplexes bearing a mimic of the deamination reaction intermediate. These structures, together with structure-guided mutagenesis and RNA-modification experiments, explain the basis of the ADAR deaminase domain's dsRNA specificity, its base-flipping mechanism, and its nearest-neighbor preferences. In addition, we identified an ADAR2-specific RNA-binding loop near the enzyme active site, thus rationalizing differences in selectivity observed between different ADARs. Finally, our results provide a structural framework for understanding the effects of ADAR mutations associated with human disease.

Indexed as

Adenosine DeaminaseBase SequenceBiocatalysisCatalytic DomainCrystallography, X-RayHumansHydrogen BondingKineticsModels, MolecularProtein BindingRNA-Binding ProteinsRNA, Double-StrandedSubstrate SpecificityADARB1 protein, humanAdenosine DeaminaseRNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID27065196
PMCPMC4918759
OpenAlexW2312883704

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.