Evidence map›Paper›PMID 27063650›Full record

ArticleJournal of clinical immunology2016

Ligase-4 Deficiency Causes Distinctive Immune Abnormalities in Asymptomatic Individuals.

Kerstin Felgentreff, Sachin N Baxi, Yu Nee Lee, Kerry Dobbs, Lauren A Henderson, Krisztian Csomos, Erdyni N Tsitsikov, Mary Armanios, Jolan E Walter, Luigi D Notarangelo

Open access · greenAbstract readCase Reports
In one paragraph

Article in Journal of clinical immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Kerstin FelgentreffDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Sachin N BaxiDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Yu Nee LeeDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Kerry DobbsDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Lauren A HendersonDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Krisztian CsomosPediatric Allergy and Immunology and the Center for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Erdyni N TsitsikovDepartment of Laboratory Medicine, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Mary ArmaniosDepartments of Oncology, Pathology and McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Jolan E WalterDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Luigi D NotarangeloDivision of Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA. luigi.notarangelo@childrens.harvard.edu.
Harvard University · USBoston Children's Hospital · USJohns Hopkins University · USUniversität Ulm · DE

Funding

Modeling and correcting human SCID using patient-derived iPS cellsR01AI100887 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI MANIS, JOHN P · 2012 to 2020
$4.5M
NIAID NIH HHS R01 AI100887NIAMS NIH HHS L40 AR065238
6 · The paper itself

Abstract

purposeDNA Ligase 4 (LIG4) is a key factor in the non-homologous end-joining (NHEJ) DNA double-strand break repair pathway needed for V(D)J recombination and the generation of the T cell receptor and immunoglobulin molecules. Defects in LIG4 result in a variable syndrome of growth retardation, pancytopenia, combined immunodeficiency, cellular radiosensitivity, and developmental delay.

methodsWe diagnosed a patient with LIG4 syndrome by radiosensitivity testing on peripheral blood cells, and established that two of her four healthy siblings carried the same compound heterozygous LIG4 mutations. An extensive analysis of the immune phenotype, cellular radiosensitivity, telomere length, and T and B cell antigen receptor repertoire was performed in all siblings.

resultsIn the three genotypically affected individuals, variable severities of radiosensitivity, alterations of T and B cell counts with an increased percentage of memory cells, and hypogammaglobulinemia, were noticed. Analysis of T and B cell antigen receptor repertoires demonstrated increased usage of alternative microhomology-mediated end-joining (MHMEJ) repair, leading to diminished N nucleotide addition and shorter CDR3 length. However, overall repertoire diversity was preserved.

conclusionsWe demonstrate that LIG4 syndrome presents with high clinical variability even within the same family, and that distinctive immunologic abnormalities may be observed also in yet asymptomatic individuals.

Indexed as

Immunologic Deficiency SyndromesAdolescentAdultAgammaglobulinemiaCell LineCells, CulturedChildDNA Ligase ATPFemaleFibroblastsGranulocytesHumansLeukocytes, MononuclearLymphocyte CountLymphocyte SubsetsMaleDNA Ligase ATPLIG4 protein, humanDNA repairimmune repertoireLigase 4 deficiencymicrohomology-mediated end-joiningtelomere length

Identifiers

PMID27063650
PMCPMC4842108
OpenAlexW2322533525

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.