Evidence map›Paper›PMID 27062925›Full record

ArticleCell2016

A Distinct Type of Pilus from the Human Microbiome.

Qingping Xu, Mikio Shoji, Satoshi Shibata, Mariko Naito, Keiko Sato, Marc-André Elsliger, Joanna C Grant, Herbert L Axelrod, Hsiu-Ju Chiu, Carol L Farr and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Article
  3. International journal of molecular sciences · 2025
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  4. Article
  5. Article
  6. Article
  7. Role of phase-variable Mfa1 fimbriae ofGut microbes reports · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Identification and characterization of the lipoproteinProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Review
  14. Identification and Characterization of the LipoproteinbioRxiv : the preprint server for biology · 2024
    Article
  15. Article
  16. Article
  17. An outer membrane vesicle specific lipoprotein promotesCurrent research in microbial sciences · 2024
    Article
  18. Article
  19. Local and Systemic Effects ofMicroorganisms · 2023
    Review
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 3 countries.

Qingping XuJoint Center for Structural Genomics, http://www.jcsg.org; SLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, USA.
Mikio ShojiDivision of Microbiology and Oral Infection, Department of Molecular Microbiology and Immunology, Nagasaki University Graduate School of Biomedical Sciences, 1-7-1 Sakamoto, Nagasaki 852-8588, Japan.
Satoshi ShibataDivision of Microbiology and Oral Infection, Department of Molecular Microbiology and Immunology, Nagasaki University Graduate School of Biomedical Sciences, 1-7-1 Sakamoto, Nagasaki 852-8588, Japan.
Mariko NaitoDivision of Microbiology and Oral Infection, Department of Molecular Microbiology and Immunology, Nagasaki University Graduate School of Biomedical Sciences, 1-7-1 Sakamoto, Nagasaki 852-8588, Japan.
Keiko SatoDivision of Microbiology and Oral Infection, Department of Molecular Microbiology and Immunology, Nagasaki University Graduate School of Biomedical Sciences, 1-7-1 Sakamoto, Nagasaki 852-8588, Japan.
Marc-André ElsligerJoint Center for Structural Genomics, http://www.jcsg.org; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Joanna C GrantJoint Center for Structural Genomics, http://www.jcsg.org; Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA.
Herbert L AxelrodJoint Center for Structural Genomics, http://www.jcsg.org; SLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, USA.
Hsiu-Ju ChiuJoint Center for Structural Genomics, http://www.jcsg.org; SLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, USA.
Carol L FarrJoint Center for Structural Genomics, http://www.jcsg.org; Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA.
Lukasz JaroszewskiJoint Center for Structural Genomics, http://www.jcsg.org; Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA 92093, USA; Program on Bioinformatics and Systems Biology, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Mark W KnuthJoint Center for Structural Genomics, http://www.jcsg.org; Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA.
Ashley M DeaconJoint Center for Structural Genomics, http://www.jcsg.org; SLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Menlo Park, CA 94025, USA.
Adam GodzikJoint Center for Structural Genomics, http://www.jcsg.org; Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA 92093, USA; Program on Bioinformatics and Systems Biology, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Scott A LesleyJoint Center for Structural Genomics, http://www.jcsg.org; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA; Protein Sciences Department, Genomics Institute of the Novartis Research Foundation, San Diego, CA 92121, USA.
Michael A CurtisCentre for Immunology and Infectious Disease (CIID), Blizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, 4 Newark Street, London E1 2AT, UK.
Koji NakayamaDivision of Microbiology and Oral Infection, Department of Molecular Microbiology and Immunology, Nagasaki University Graduate School of Biomedical Sciences, 1-7-1 Sakamoto, Nagasaki 852-8588, Japan. Electronic address: knak@nagasaki-u.ac.jp.
Ian A WilsonJoint Center for Structural Genomics, http://www.jcsg.org; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address: wilson@scripps.edu.
Nagasaki University · JPJoint Center for Structural Genomics · USSLAC National Accelerator Laboratory · USStanford Synchrotron Radiation Lightsource · USDiscovery Institute · USGenomics Institute of the Novartis Research Foundation · USQueen Mary University of London · GBSanford Burnham Prebys Medical Discovery Institute · USScripps Research Institute · US

Funding

Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2010 to 2014
$40.1M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

Pili are proteinaceous polymers of linked pilins that protrude from the cell surface of many bacteria and often mediate adherence and virulence. We investigated a set of 20 Bacteroidia pilins from the human microbiome whose structures and mechanism of assembly were unknown. Crystal structures and biochemical data revealed a diverse protein superfamily with a common Greek-key β sandwich fold with two transthyretin-like repeats that polymerize into a pilus through a strand-exchange mechanism. The assembly mechanism of the central, structural pilins involves proteinase-assisted removal of their N-terminal β strand, creating an extended hydrophobic groove that binds the C-terminal donor strands of the incoming pilin. Accessory pilins at the tip and base have unique structural features specific to their location, allowing initiation or termination of the assembly. The Bacteroidia pilus, therefore, has a biogenesis mechanism that is distinct from other known pili and likely represents a different type of bacterial pilus.

Indexed as

Fimbriae, BacterialGastrointestinal MicrobiomeAmino Acid SequenceCrystallography, X-RayFimbriae ProteinsHumansLipoproteinsModels, MolecularMolecular Sequence DataSequence AlignmentFimbriae ProteinsLipoproteins

Identifiers

PMID27062925
PMCPMC4842110
OpenAlexW2315654207

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.