Evidence map›Paper›PMID 27062026›Full record

ArticleTraffic (Copenhagen, Denmark)2016

Creating a chimeric clathrin heavy chain that functions independently of yeast clathrin light chain.

Douglas R Boettner, Verónica A Segarra, Balaji T Moorthy, Nagore de León, John Creagh, John R Collette, Arun Malhotra, Sandra K Lemmon

Abstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Douglas R BoettnerDepartment of Molecular and Cellular Pharmacology, University of Miami, Miami, FL, USA.ORCID 0000-0002-0591-443X
Verónica A SegarraDepartment of Molecular and Cellular Pharmacology, University of Miami, Miami, FL, USA.
Balaji T MoorthyDepartment of Molecular and Cellular Pharmacology, University of Miami, Miami, FL, USA.
Nagore de LeónDepartamento de Microbiologıa y Genetica/IBFG, Universidad de Salamanca/CSIC, Salamanca, Spain.
John CreaghDepartment of Molecular and Cellular Pharmacology, University of Miami, Miami, FL, USA.
John R ColletteDepartment of Molecular and Cellular Pharmacology, University of Miami, Miami, FL, USA.
Arun MalhotraDepartment of Biochemistry and Molecular Biology, University of Miami, Miami, FL, USA.
Sandra K LemmonDepartment of Molecular and Cellular Pharmacology, University of Miami, Miami, FL, USA.

Funding

SUPPRESSORS OF CLATHRIN DEFICIENCY IN YEASTR01GM055796 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LEMMON, SANDRA K. · 1998 to 2015
$4.7M
TRAINING PROGRAMS IN CARDIOVASCULAR PHARMACOLOGYT32HL007188 · NHLBI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SZCZESNA-CORDARY, DANUTA · 1985 to 2011
$3.8M
Regulation of endoytosis by clathrin light chain.F32GM084677 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BOETTNER, DOUGLAS ROBB · 2008 to 2010
$149k
NHLBI NIH HHS T32 HL007188NIGMS NIH HHS F32 GM084677NIGMS NIH HHS R01 GM055796
6 · The paper itself

Abstract

Clathrin facilitates vesicle formation during endocytosis and sorting in the trans-Golgi network (TGN)/endosomal system. Unlike in mammals, yeast clathrin function requires both the clathrin heavy (CHC) and clathrin light (CLC) chain, since Chc1 does not form stable trimers without Clc1. To further delineate clathrin subunit functions, we constructed a chimeric CHC protein (Chc-YR) , which fused the N-terminus of yeast CHC (1-1312) to the rat CHC residues 1318-1675, including the CHC trimerization region. The novel CHC-YR allele encoded a stable protein that fractionated as a trimer. CHC-YR also complemented chc1Δ slow growth and clathrin TGN/endosomal sorting defects. In strains depleted for Clc1 (either clc1Δ or chc1Δ clc1Δ), CHC-YR, but not CHC1, suppressed TGN/endosomal sorting and growth phenotypes. Chc-YR-GFP (green fluorescent protein) localized to the TGN and cortical patches on the plasma membrane, like Chc1 and Clc1. However, Clc1-GFP was primarily cytoplasmic in chc1Δ cells harboring pCHC-YR, indicating that Chc-YR does not bind yeast CLC. Still, some partial phenotypes persisted in cells with Chc-YR, which are likely due either to loss of CLC recruitment or chimeric HC lattice instability. Ultimately, these studies have created a tool to examine non-trimerization roles for the clathrin LC.

Indexed as

AnimalsCell MembraneClathrin Heavy ChainsClathrin Light ChainsEndocytosisGreen Fluorescent ProteinsProtein BindingProtein TransportRatsRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinstrans-Golgi NetworkClathrin Heavy ChainsClathrin Light ChainsGreen Fluorescent ProteinsRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsClathrinendocytosismembrane traffickingTGN/endosomal sorting

Identifiers

PMID27062026
PMCPMC5609853

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.