Evidence map›Paper›PMID 27061590›Full record

ArticleAging cell2016

Characterization of the direct targets of FOXO transcription factors throughout evolution.

Ashley E Webb, Anshul Kundaje, Anne Brunet

Open access · goldAbstract read
In one paragraph

Article in Aging cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 187 citations in OpenAlex.

  1. Article
  2. International journal of molecular sciences · 2026
    Article
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  4. Article
  5. Article
  6. TACI regulates marginal zone B cell development.The Journal of experimental medicine · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Insulin Resistance Is a Modifying Factor for Parkinson's Disease.Movement disorders : official journal of the Movement Disorder Society · 2025
    Article
  14. Measuring FOXO Nuclear Shuttling Dynamics by Fluorescence Microscopy.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  15. Reporter Gene Assays to Measure FOXO-Specific Transcriptional Activity.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  16. Article
  17. Article
  18. Whole-Genome Resequencing Reveals Signatures of Adaptive Evolution inAnimals : an open access journal from MDPI · 2024
    Article
  19. Article
  20. FOXO1 regulates expression of Neurod4 in the pituitary gland.Molecular and cellular endocrinology · 2024
    Article

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Ashley E WebbDepartment of Genetics, Stanford University, 300 Pasteur Drive, Stanford, CA, 94305, USA.
Anshul KundajeDepartment of Genetics, Stanford University, 300 Pasteur Drive, Stanford, CA, 94305, USA.
Anne BrunetDepartment of Genetics, Stanford University, 300 Pasteur Drive, Stanford, CA, 94305, USA.
Stanford University · USStanford Medicine · US

Funding

Training CoreP20GM103430 · NIGMS · UNIVERSITY OF RHODE ISLAND · PI Bongsup P Cho · 2012 to 2026
$63.6M
Wnt signaling in muscle stem cell agingP01AG036695 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MARGARET A. GOODELL · 2011 to 2026
$29.3M
NIA NIH HHS P01 AG036695NIGMS NIH HHS P20 GM103430
6 · The paper itself

Abstract

FOXO transcription factors (FOXOs) are central regulators of lifespan across species, yet they also have cell-specific functions, including adult stem cell homeostasis and immune function. Direct targets of FOXOs have been identified genome-wide in several species and cell types. However, whether FOXO targets are specific to cell types and species or conserved across cell types and throughout evolution remains uncharacterized. Here, we perform a meta-analysis of direct FOXO targets across tissues and organisms, using data from mammals as well as Caenorhabditis elegans and Drosophila. We show that FOXOs bind cell type-specific targets, which have functions related to that particular cell. Interestingly, FOXOs also share targets across different tissues in mammals, and the function and even the identity of these shared mammalian targets are conserved in invertebrates. Evolutionarily conserved targets show enrichment for growth factor signaling, metabolism, stress resistance, and proteostasis, suggesting an ancestral, conserved role in the regulation of these processes. We also identify candidate cofactors at conserved FOXO targets that change in expression with age, including CREB and ETS family factors. This meta-analysis provides insight into the evolution of the FOXO network and highlights downstream genes and cofactors that may be particularly important for FOXO's conserved function in adult homeostasis and longevity.

Indexed as

Biological EvolutionAgingAnimalsBase SequenceBinding SitesCaenorhabditis elegansConserved SequenceDrosophila melanogasterForkhead Transcription FactorsGene Expression RegulationHumansMiceNucleotide MotifsOrgan SpecificityProtein BindingForkhead Transcription FactorsChIP-seqDAF-16evolutionary conservationFOXOtranscriptional networks

Identifiers

PMID27061590
PMCPMC4933671
OpenAlexW2331547930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.