Evidence map›Paper›PMID 27060890›Full record

ArticleClinical genetics2016

Autosomal recessive IFT57 hypomorphic mutation cause ciliary transport defect in unclassified oral-facial-digital syndrome with short stature and brachymesophalangia.

J Thevenon, L Duplomb, S Phadke, T Eguether, A Saunier, M Avila, V Carmignac, A-L Bruel, J St-Onge, Y Duffourd and 9 more

Abstract read
In one paragraph

Article in Clinical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Paralog-specific TTC30 regulation of Sonic hedgehog signaling.Frontiers in molecular biosciences · 2023
    Article
  10. Article
  11. Clinical and genetic heterogeneity of primary ciliopathies (Review).International journal of molecular medicine · 2021
    Review
  12. Intraflagellar Transport Proteins as Regulators of Primary Cilia Length.Frontiers in cell and developmental biology · 2021
    Review
  13. Genes and molecular pathways underpinning ciliopathies.Nature reviews. Molecular cell biology · 2017
    Review
  14. Review
  15. Ciliopathies.Cold Spring Harbor perspectives in biology · 2017
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 4 countries.

J ThevenonFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.ORCID 0000-0001-9271-3961
L DuplombFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
S PhadkeDepartment of Medical Genetics, Sanjay Gandhi Post Graduate Institute of Medical Sciences, Lucknow, India.
T EguetherProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
A SaunierLaboratoire de Génétique Médicale, CHU - Hopitaux de Brabois, Vandoeuvre les Nancy cedex, France.
M AvilaFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
V CarmignacFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
A-L BruelFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
J St-OngeFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
Y DuffourdFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
G J PazourProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
B FrancoTelethon Institute of Genetics and Medicine, Naples, Italy.
T Attie-BitachService de Génétique, Hôpital Necker-Enfants Malades, APHP, Institut Imagine, INSERM UMR1163, University Sorbonne-Paris-Cité, Paris, France.
A Masurel-PauletFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
J-B RivièreFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
V Cormier-DaireService de Génétique, Hôpital Necker-Enfants Malades, APHP, Institut Imagine, INSERM UMR1163, University Sorbonne-Paris-Cité, Paris, France.
C PhilippeLaboratoire de Génétique Médicale, CHU - Hopitaux de Brabois, Vandoeuvre les Nancy cedex, France.
L FaivreFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
C Thauvin-RobinetFHU-TRANSLAD, Université de Bourgogne/CHU Dijon, Dijon, France.
Université de Bourgogne · FRCentre Hospitalier Régional et Universitaire de Nancy · FRHôpital Necker-Enfants Malades · FRUniversity of Massachusetts Chan Medical School · USFederico II University Hospital · ITSanjay Gandhi Post Graduate Institute of Medical Sciences · IN

Funding

Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsUC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2010 to 2010
$14.7M
Northwest Genomics CenterUC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2010 to 2010
$14.0M
Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
Intraflagellar Transport Proteins in MiceR01GM060992 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Gregory J Pazour · 2001 to 2026
$10.3M
Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsRC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2009 to 2009
$10.2M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
ARRA - NHLBI Lung Cohorts Sequencing ProjectUC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2010 to 2010
$2.6M
WHI Sequencing Project (WHISP)UC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2010 to 2010
$2.4M
WHI Sequencing Project (WHISP)RC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2009 to 2009
$2.1M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsUC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2010 to 2010
$1.5M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsRC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2009 to 2009
$817k
NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS RC2 HL102924NHLBI NIH HHS RC2 HL102925NHLBI NIH HHS RC2 HL102926NHLBI NIH HHS RC2 HL103010NHLBI NIH HHS UC2 HL102923NHLBI NIH HHS UC2 HL102924NHLBI NIH HHS UC2 HL102925NHLBI NIH HHS UC2 HL102926NHLBI NIH HHS UC2 HL103010NIGMS NIH HHS R01 GM060992
6 · The paper itself

Abstract

The 13 subtypes of oral-facial-digital syndrome (OFDS) belong to the heterogeneous group of ciliopathies. Disease-causing genes encode for centrosomal proteins, components of the transition zone or proteins implicated in ciliary signaling. A unique consanguineous family presenting with an unclassified OFDS with skeletal dysplasia and brachymesophalangia was explored. Homozygosity mapping and exome sequencing led to the identification of a homozygous mutation in IFT57, which encodes a protein implicated in ciliary transport. The mutation caused splicing anomalies with reduced expression of the wild-type transcript and protein. Both anterograde ciliary transport and sonic hedgehog signaling were significantly decreased in subjects' fibroblasts compared with controls. Sanger sequencing of IFT57 in 13 OFDS subjects and 12 subjects with Ellis-Van Creveld syndrome was negative. This report identifies the implication of IFT57 in human pathology and highlights the first description of a ciliary transport defect in OFDS, extending the genetic heterogeneity of this subgroup of ciliopathies.

Indexed as

Adaptor Proteins, Signal TransducingAdolescentAdultCiliopathiesConsanguinityCraniofacial AbnormalitiesDwarfismEarEllis-Van Creveld SyndromeExomeFemaleGenetic HeterogeneityHigh-Throughput Nucleotide SequencingHomozygoteHumansMaleAdaptor Proteins, Signal TransducingIFT57 protein, humanciliopathyexome sequencingIFT57oral-facial-digital syndrome

Identifiers

PMID27060890
PMCPMC5765760
OpenAlexW2328152174

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.