Evidence map›Paper›PMID 27060415›Full record

ArticleBiochimica et biophysica acta2016

Regulation of ribosomal RNA expression across the lifespan is fine-tuned by maternal diet before implantation.

Oleg Denisenko, Emma S Lucas, Congshan Sun, Adam J Watkins, Daniel Mar, Karol Bomsztyk, Tom P Fleming

Open access · hybridAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
12.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Environmental Exposures around Conception: Developmental Pathways Leading to Lifetime Disease Risk.International journal of environmental research and public health · 2021
    Review
  8. Single cell epigenetic visualization assay.Nucleic acids research · 2021
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. Chaperones, Canalization, and Evolution of Animal Forms.International journal of molecular sciences · 2018
    Review
  15. Article
  16. When maternal periconceptional diet affects neurological development, it's time to think.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Oleg DenisenkoDepartment of Medicine, University of Washington, 850 Republican St., Rm 242, Seattle, WA 98109, USA. Electronic address: odenis@uw.edu.
Emma S LucasCentre for Biological Sciences, University of Southampton, Mailpoint 840, Level D Lab & Path Block, Southampton General Hospital, Tremona Road, Southampton SO16 6YD, UK.
Congshan SunCentre for Biological Sciences, University of Southampton, Mailpoint 840, Level D Lab & Path Block, Southampton General Hospital, Tremona Road, Southampton SO16 6YD, UK.
Adam J WatkinsCentre for Biological Sciences, University of Southampton, Mailpoint 840, Level D Lab & Path Block, Southampton General Hospital, Tremona Road, Southampton SO16 6YD, UK.
Daniel MarDepartment of Medicine, University of Washington, 850 Republican St., Rm 242, Seattle, WA 98109, USA.
Karol BomsztykDepartment of Medicine, University of Washington, 850 Republican St., Rm 242, Seattle, WA 98109, USA.
Tom P FlemingCentre for Biological Sciences, University of Southampton, Mailpoint 840, Level D Lab & Path Block, Southampton General Hospital, Tremona Road, Southampton SO16 6YD, UK.
University of Southampton · GBUniversity of Washington · USSouthampton General Hospital · GB

Funding

Mechanisms of megakaryocyte maturationR01DK094934 · NIDDK · YALE UNIVERSITY · PI KRAUSE, DIANE S · 2012 to 2016
$2.7M
Acute Renal Failure: An Endotoxin Hyper-Responsive StateR01DK083310 · NIDDK · UNIVERSITY OF WASHINGTON · PI BOMSZTYK, KAROL, ZAGER, RICHARD A. · 2010 to 2013
$1.5M
Next generation technology to detect epigenetic alterations in human tissuesR33CA191135 · NCI · UNIVERSITY OF WASHINGTON · PI BOMSZTYK, KAROL · 2015 to 2017
$1.3M
Integrated microplate platform for epigenetic analysisR21GM111439 · NIGMS · UNIVERSITY OF WASHINGTON · PI BOMSZTYK, KAROL · 2014 to 2016
$601k
Single cell analysis of chromatin changes at individual genesR21DK098817 · NIDDK · UNIVERSITY OF WASHINGTON · PI DENISENKO, OLEG N · 2012 to 2013
$471k
Biotechnology and Biological Sciences Research Council BB/F007450/1Biotechnology and Biological Sciences Research Council BB/I001840/1NCI NIH HHS R33 CA191135NIDDK NIH HHS DK083310NIDDK NIH HHS DK094934NIDDK NIH HHS DK098817NIDDK NIH HHS R01 DK083310NIDDK NIH HHS R01 DK094934NIDDK NIH HHS R21 DK098817NIGMS NIH HHS GM111439NIGMS NIH HHS R21 GM111439
6 · The paper itself

Abstract

Cells and organisms respond to nutrient deprivation by decreasing global rates of transcription, translation and DNA replication. To what extent such changes can be reversed is largely unknown. We examined the effect of maternal dietary restriction on RNA synthesis in the offspring. Low protein diet fed either throughout gestation or for the preimplantation period alone reduced cellular RNA content across fetal somatic tissues during challenge and increased it beyond controls in fetal and adult tissues after challenge release. Changes in transcription of ribosomal RNA, the major component of cellular RNA, were responsible for this phenotype as evidenced by matching alterations in RNA polymerase I density and DNA methylation at ribosomal DNA loci. Cellular levels of the ribosomal transcription factor Rrn3 mirrored the rRNA expression pattern. In cell culture experiments, Rrn3 overexpression reduced rDNA methylation and increased rRNA expression; the converse occurred after inhibition of Rrn3 activity. These observations define novel mechanism where poor nutrition before implantation irreversibly alters basal rates of rRNA transcription thereafter in a process mediated by rDNA methylation and Rrn3 factor.

Indexed as

Gene Expression Regulation, DevelopmentalMaternal Nutritional Physiological PhenomenaAnimalsDietEmbryo ImplantationEmbryo, MammalianEmbryonic DevelopmentFemaleHEK293 CellsHumansMalePregnancyPrenatal Exposure Delayed EffectsRNA, RibosomalRNA, RibosomalDNA methylationMaternal dietrDNA transcriptionRRN3Thrifty geneTIF-1A

Identifiers

PMID27060415
PMCPMC4914606
OpenAlexW2318877229

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.