Evidence map›Paper›PMID 27060065›Full record

ArticleEcoHealth2016

Assessing the ability of swab data to determine the true burden of infection for the amphibian pathogen Batrachochytrium dendrobatidis.

Frances Clare, Olivia Daniel, Trent Garner, Matthew Fisher

Abstract read
In one paragraph

Article in EcoHealth, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Co-Exposure with the Herbicide 2,4-D Does Not ExacerbateAnimals : an open access journal from MDPI · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Chytrid fungi and global amphibian declines.Nature reviews. Microbiology · 2020
    Review
  8. Climate structuring ofRoyal Society open science · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Tackling emerging fungal threats to animal health, food security and ecosystem resilience.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Article
  13. Overview of chytrid emergence and impacts on amphibians.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Frances ClareThe Institute of Zoology, The Zoological Society of London, Regent's Park, London, NW1 4RY, UK. frances.clare@ioz.ac.uk.
Olivia DanielDepartment of Life Sciences, Imperial College London, Silwood Park Campus, London, SL5 9PU, UK.
Trent GarnerThe Institute of Zoology, The Zoological Society of London, Regent's Park, London, NW1 4RY, UK.
Matthew FisherDepartment of Infectious Disease Epidemiology, Imperial College London, London, W2 1PG, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Batrachochytrium dendrobatidis (Bd) is a pathogenic fungus which causes the disease chytridiomycosis in amphibians by infecting the animals' epidermis. The most commonly applied method for the detection of Bd is the use of a sterile swab, rubbed over the keratinized areas of an amphibian and then processed to yield DNA for detection by qPCR. This method has been used to infer a threshold of lethal infection in some species; however, how reliable and reproducible the swabbing method is at detecting the true burden of infection suffered by individuals is not known. European midwife toads, Alytes obstetricans, are susceptible to chytridiomycosis and are highly parasitised by Bd across Europe. By quantifying Bd-load throughout the entire skin and comparing this to swab results taken from the same individual, we determined whether epidermal swabs provide a quantifiable and accurate indication of the true fungal burden suffered. Further, we examined whether we could infer a threshold for lethal infection based on comparison of swab data taken from infected A. obstetricans exhibiting different clinical states. From swab data, we detected significantly higher fungal burdens from moribund metamorphs compared to visually healthy individuals; however, the ability of these swab data to provide an accurate indication of the true fungal burden was not reliable. These data suggest that fungal load dynamics play an important role in disease-induced mortality in A. obstetricans at these sites, but that using swab data to infer an exact threshold for Bd-associated mortality might be inappropriate and misleading.

Indexed as

AnimalsAnuraChytridiomycotaEuropeMycosesSpecimen HandlingAlytes obstetricansBatrachochytrium dendrobatidischytridiomycosisemerging infectious diseasesinfection thresholdqPCR

Identifiers

PMID27060065
PMCPMC4996874

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.